Analysis of interatomic Contacts of Structural Units in PDB entry:
2YZR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YZR entry

There are 3 chains in PDB entry 2YZR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5GLY 313
B
 MET 15GLY 313
C
 MET 15GLY 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 2YZR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 15Right-handed alpha
Helix 2
2
A
26 37Right-handed alpha
Helix 3
3
A
47 52Right-handed alpha
Helix 4
4
A
62 73Right-handed alpha
Helix 5
5
A
85 95Right-handed alpha
Helix 6
6
A
116 120Right-handed 310
Helix 7
7
A
130 141Right-handed alpha
Helix 8
8
A
156 174Right-handed alpha
Helix 9
9
A
177 190Right-handed alpha
Helix 10
10
A
193 203Right-handed alpha
Helix 11
11
A
221 239Right-handed alpha
Helix 12
12
A
253 263Right-handed alpha
Helix 13
13
A
271 276Right-handed alpha
Helix 14
14
A
279 293Right-handed alpha
Helix 15
15
A
296 305Right-handed alpha
Helix 16
16
B
26 37Right-handed alpha
Helix 17
17
B
47 55Right-handed alpha
Helix 18
18
B
62 73Right-handed alpha
Helix 19
19
B
85 95Right-handed alpha
Helix 20
20
B
116 120Right-handed 310
Helix 21
21
B
130 140Right-handed alpha
Helix 22
22
B
156 174Right-handed alpha
Helix 23
23
B
177 190Right-handed alpha
Helix 24
24
B
193 203Right-handed alpha
Helix 25
25
B
221 239Right-handed alpha
Helix 26
26
B
253 263Right-handed alpha
Helix 27
27
B
271 276Right-handed alpha
Helix 28
28
B
279 293Right-handed alpha
Helix 29
29
B
296 305Right-handed alpha
Helix 30
30
C
26 37Right-handed alpha
Helix 31
31
C
47 52Right-handed alpha
Helix 32
32
C
62 73Right-handed alpha
Helix 33
33
C
85 95Right-handed alpha
Helix 34
34
C
116 120Right-handed 310
Helix 35
35
C
130 141Right-handed alpha
Helix 36
36
C
156 174Right-handed alpha
Helix 37
37
C
177 190Right-handed alpha
Helix 38
38
C
193 203Right-handed alpha
Helix 39
39
C
221 239Right-handed alpha
Helix 40
40
C
253 263Right-handed alpha
Helix 41
41
C
271 276Right-handed alpha
Helix 42
42
C
279 293Right-handed alpha
Helix 43
43
C
296 305Right-handed alpha
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There are 6 sheets in PDB entry 2YZR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
40 43parallel
Strand 3
A
77 82parallel
Strand 4
A
99 103parallel
Strand 5
A
124 127parallel
Strand 6
A
144 147parallel
Strand 7
A
244 247parallel
Strand 8
A
268 270parallel
Strand 9
A
20 24parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
219 220anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
40 43parallel
Strand 3
B
77 82parallel
Strand 4
B
99 103parallel
Strand 5
B
124 128parallel
Strand 6
B
144 148parallel
Strand 7
B
244 248parallel
Strand 8
B
267 270parallel
Strand 9
B
20 24parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 216first strand
Strand 2
B
219 220anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 24first strand
Strand 2
C
40 43parallel
Strand 3
C
77 82parallel
Strand 4
C
99 103parallel
Strand 5
C
124 128parallel
Strand 6
C
144 148parallel
Strand 7
C
244 248parallel
Strand 8
C
267 270parallel
Strand 9
C
19 24parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 216first strand
Strand 2
C
219 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il