Analysis of interatomic Contacts of Structural Units in PDB entry:
2Z0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Z0Y entry

There are 2 chains in PDB entry 2Z0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5ARG 228
B
 LEU 55ARG 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2Z0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 25Right-handed alpha
Helix 2
2
A
83 96Right-handed alpha
Helix 3
3
A
114 129Right-handed alpha
Helix 4
4
A
147 149Right-handed 310
Helix 5
5
A
165 169Right-handed 310
Helix 6
6
A
187 196Right-handed alpha
Helix 7
7
A
210 223Right-handed alpha
Helix 8
8
B
83 95Right-handed alpha
Helix 9
9
B
114 133Right-handed alpha
Helix 10
10
B
165 169Right-handed 310
Helix 11
11
B
187 198Right-handed alpha
Helix 12
12
B
210 223Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 2Z0Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
36 38parallel
Strand 3
A
43 45anti-parallel
Strand 4
A
61 63anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
99 104parallel
Strand 3
A
144 145parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
99 104parallel
Strand 3
A
73 78parallel
Strand 4
A
176 180parallel
Strand 5
A
155 158parallel
Strand 6
A
199 202parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
99 100parallel
Strand 3
B
73 77parallel
Strand 4
B
176 180parallel
Strand 5
B
155 158parallel
Strand 6
B
199 202parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
144 145parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il