Analysis of interatomic Contacts of Structural Units in PDB entry:
2Z5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Z5B entry

There are 2 chains in PDB entry 2Z5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 147
B
 MET 1ALA 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 2Z5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
90 109Right-handed alpha
Helix 2
2
A
124 130Right-handed alpha
Helix 3
3
A
130 147Right-handed alpha
Helix 4
4
B
83 92Right-handed alpha
Helix 5
5
B
108 123Right-handed alpha
Helix 6
6
B
147 150Right-handed 310
Helix 7
7
B
161 177Right-handed alpha
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There are 2 sheets in PDB entry 2Z5B. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
38 44anti-parallel
Strand 4
A
112 118parallel
Strand 5
A
55 64anti-parallel
Strand 6
A
80 86anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 9first strand
Strand 2
B
26 33anti-parallel
Strand 3
B
38 44anti-parallel
Strand 4
B
140 145parallel
Strand 5
B
50 56anti-parallel
Strand 6
B
95 101anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il