Analysis of interatomic Contacts of Structural Units in PDB entry:
2Z5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Z5D entry

There are 2 chains in PDB entry 2Z5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 23LYS 174
B
 PRO 25GLU 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2Z5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 40Right-handed alpha
Helix 2
2
A
106 114Right-handed alpha
Helix 3
3
A
121 126Right-handed alpha
Helix 4
4
A
126 134Right-handed alpha
Helix 5
5
A
142 152Right-handed alpha
Helix 6
6
A
152 168Right-handed alpha
Helix 7
7
A
169 174Right-handed alpha
Helix 8
8
B
25 40Right-handed alpha
Helix 9
9
B
106 114Right-handed alpha
Helix 10
10
B
119 126Right-handed alpha
Helix 11
11
B
126 134Right-handed alpha
Helix 12
12
B
142 152Right-handed alpha
Helix 13
13
B
152 168Right-handed alpha
Helix 14
14
B
169 175Right-handed alpha
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There are 2 sheets in PDB entry 2Z5D. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
52 58anti-parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
86 89anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 49first strand
Strand 2
B
52 58anti-parallel
Strand 3
B
69 75anti-parallel
Strand 4
B
86 89anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il