Analysis of interatomic Contacts of Structural Units in PDB entry:
2Z79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Z79 entry

There are 2 chains in PDB entry 2Z79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TRP 185
B
 SER 2TRP 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 2Z79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
146 156Right-handed alpha
Helix 2
2
B
146 156Right-handed alpha
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There are 4 sheets in PDB entry 2Z79. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
35 42anti-parallel
Strand 3
A
163 174anti-parallel
Strand 4
A
64 73anti-parallel
Strand 5
A
77 85anti-parallel
Strand 6
A
120 132parallel
Strand 7
A
103 117anti-parallel
Strand 8
A
93 100anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
177 185anti-parallel
Strand 4
A
50 61anti-parallel
Strand 5
A
142 145anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
35 42anti-parallel
Strand 3
B
163 185anti-parallel
Strand 4
B
50 73anti-parallel
Strand 5
B
77 85anti-parallel
Strand 6
B
123 132parallel
Strand 7
B
103 115anti-parallel
Strand 8
B
93 100anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 20first strand
Strand 2
B
25 31anti-parallel
Strand 3
B
163 185anti-parallel
Strand 4
B
50 73anti-parallel
Strand 5
B
142 145anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il