Analysis of interatomic Contacts of Structural Units in PDB entry:
2Z87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Z87 entry

There are 2 chains in PDB entry 2Z87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 59ILE 682
B
 ALA 59ILE 682
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 2Z87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 75Right-handed alpha
Helix 2
2
A
80 95Right-handed alpha
Helix 3
3
A
129 136Right-handed alpha
Helix 4
4
A
161 171Right-handed alpha
Helix 5
5
A
193 202Right-handed alpha
Helix 6
6
A
218 230Right-handed alpha
Helix 7
7
A
247 257Right-handed alpha
Helix 8
8
A
272 276Right-handed 310
Helix 9
9
A
277 284Right-handed alpha
Helix 10
10
A
286 291Right-handed alpha
Helix 11
11
A
311 319Right-handed alpha
Helix 12
12
A
328 333Right-handed 310
Helix 13
13
A
342 349Right-handed alpha
Helix 14
14
A
360 371Right-handed alpha
Helix 15
15
A
380 382Right-handed 310
Helix 16
16
A
405 410Right-handed alpha
Helix 17
17
A
446 456Right-handed alpha
Helix 18
18
A
474 484Right-handed alpha
Helix 19
19
A
498 510Right-handed alpha
Helix 20
20
A
527 539Right-handed alpha
Helix 21
21
A
569 574Right-handed alpha
Helix 22
22
A
587 592Right-handed alpha
Helix 23
23
A
603 616Right-handed alpha
Helix 24
24
A
641 655Right-handed alpha
Helix 25
25
A
656 659Right-handed 310
Helix 26
26
B
64 74Right-handed alpha
Helix 27
27
B
80 96Right-handed alpha
Helix 28
28
B
129 136Right-handed alpha
Helix 29
29
B
161 174Right-handed alpha
Helix 30
30
B
193 201Right-handed alpha
Helix 31
31
B
202 204Right-handed 310
Helix 32
32
B
218 230Right-handed alpha
Helix 33
33
B
247 257Right-handed alpha
Helix 34
34
B
277 284Right-handed alpha
Helix 35
35
B
312 318Right-handed alpha
Helix 36
36
B
328 333Right-handed 310
Helix 37
37
B
342 349Right-handed alpha
Helix 38
38
B
360 372Right-handed alpha
Helix 39
39
B
409 413Right-handed 310
Helix 40
40
B
446 456Right-handed alpha
Helix 41
41
B
474 484Right-handed alpha
Helix 42
42
B
498 507Right-handed alpha
Helix 43
43
B
527 539Right-handed alpha
Helix 44
44
B
569 574Right-handed alpha
Helix 45
45
B
587 593Right-handed alpha
Helix 46
46
B
603 616Right-handed alpha
Helix 47
47
B
637 655Right-handed alpha
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There are 10 sheets in PDB entry 2Z87. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
618 629anti-parallel
Strand 3
A
544 552parallel
Strand 4
A
583 586anti-parallel
Strand 5
A
514 517anti-parallel
Strand 6
A
434 440parallel
Strand 7
A
462 469parallel
Strand 8
A
489 494parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
618 629anti-parallel
Strand 3
A
523 524anti-parallel
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There are 14 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 378first strand
Strand 2
A
262 265parallel
Strand 3
A
337 341anti-parallel
Strand 4
A
234 238anti-parallel
Strand 5
A
151 158parallel
Strand 6
A
180 188parallel
Strand 7
A
207 212parallel
Strand 8
B
207 212anti-parallel
Strand 9
B
180 188parallel
Strand 10
B
151 158parallel
Strand 11
B
234 237parallel
Strand 12
B
338 341anti-parallel
Strand 13
B
262 265anti-parallel
Strand 14
B
375 378parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 244first strand
Strand 2
A
384 387anti-parallel
Strand 3
A
268 271parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 300first strand
Strand 2
A
303 307anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
665 667first strand
Strand 2
A
677 679anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 244first strand
Strand 2
B
384 387anti-parallel
Strand 3
B
268 271parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 494first strand
Strand 2
B
462 469parallel
Strand 3
B
434 440parallel
Strand 4
B
514 517parallel
Strand 5
B
583 586anti-parallel
Strand 6
B
544 552anti-parallel
Strand 7
B
618 629parallel
Strand 8
B
523 524anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 494first strand
Strand 2
B
462 469parallel
Strand 3
B
434 440parallel
Strand 4
B
514 517parallel
Strand 5
B
583 586anti-parallel
Strand 6
B
544 552anti-parallel
Strand 7
B
558 561anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
663 667first strand
Strand 2
B
677 681anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il