Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 2Z8P entry
Note, this PDB entry contains
modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is
treated as heterogroup (ligand) both in the
PDB entry and in LPC/CSU analysis.
There are 4 chains in PDB entry 2Z8P
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
GLU 25 | GLU 241 |
B
|
GLY 180 | ALA 182 |
B
|
VAL 184 | VAL 184 |
B
|
ALA 186 | ALA 186 |
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There are 9
helices in PDB entry 2Z8P. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
1 | A
| 28 |
36 | Right-handed alpha |
| Helix 2 |
2 | A
| 36 |
45 | Right-handed alpha |
| Helix 3 |
3 | A
| 60 |
66 | Right-handed alpha |
| Helix 4 |
4 | A
| 110 |
112 | Right-handed 310 |
| Helix 5 |
5 | A
| 113 |
126 | Right-handed alpha |
| Helix 6 |
6 | A
| 147 |
152 | Right-handed alpha |
| Helix 7 |
7 | A
| 169 |
190 | Right-handed alpha |
| Helix 8 |
8 | A
| 223 |
231 | Right-handed alpha |
| Helix 9 |
9 | A
| 233 |
241 | Right-handed alpha |
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There is
1 sheet ( A) in PDB entry 2Z8P.
There are 7
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 71 |
73 | first strand |
| Strand 2 |
A
| 76 |
79 | anti-parallel |
| Strand 3 |
A
| 86 |
91 | anti-parallel |
| Strand 4 |
A
| 134 |
138 | anti-parallel |
| Strand 5 |
A
| 155 |
158 | anti-parallel |
| Strand 6 |
A
| 103 |
107 | anti-parallel |
| Strand 7 |
A
| 210 |
214 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il