Analysis of interatomic Contacts of Structural Units in PDB entry:
2Z8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Z8R entry

There are 2 chains in PDB entry 2Z8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 38PRO 620
B
 ALA 38PRO 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2Z8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
290 295Right-handed 310
Helix 2
2
A
300 303Right-handed 310
Helix 3
3
A
354 358Right-handed 310
Helix 4
4
A
532 536Right-handed 310
Helix 5
5
A
577 580Right-handed 310
Helix 6
6
A
581 591Right-handed alpha
Helix 7
7
B
290 295Right-handed 310
Helix 8
8
B
300 303Right-handed 310
Helix 9
9
B
354 358Right-handed 310
Helix 10
10
B
532 536Right-handed 310
Helix 11
11
B
577 580Right-handed 310
Helix 12
12
B
581 591Right-handed alpha
Back to top of page

There are 26 sheets in PDB entry 2Z8R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
617 618parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
73 78anti-parallel
Strand 3
A
103 110anti-parallel
Strand 4
A
121 124anti-parallel
Strand 5
A
50 54parallel
Strand 6
A
57 61anti-parallel
Strand 7
A
92 95anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
73 78anti-parallel
Strand 3
A
103 110anti-parallel
Strand 4
A
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
561 565anti-parallel
Strand 3
A
551 556anti-parallel
Strand 4
A
528 529anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
561 565anti-parallel
Strand 3
A
551 556anti-parallel
Strand 4
A
540 542anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
146 147anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 157first strand
Strand 2
A
166 173anti-parallel
Strand 3
A
189 193anti-parallel
Strand 4
A
199 204anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 221first strand
Strand 2
A
230 235anti-parallel
Strand 3
A
267 272anti-parallel
Strand 4
A
278 283anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 310first strand
Strand 2
A
318 323anti-parallel
Strand 3
A
330 337anti-parallel
Strand 4
A
340 348anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 368first strand
Strand 2
A
377 380anti-parallel
Strand 3
A
383 385anti-parallel
Strand 4
A
391 394anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 406first strand
Strand 2
A
416 420anti-parallel
Strand 3
A
430 434anti-parallel
Strand 4
A
440 444anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 456first strand
Strand 2
A
466 469anti-parallel
Strand 3
A
472 474anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 493first strand
Strand 2
A
502 505anti-parallel
Strand 3
A
508 513anti-parallel
Strand 4
A
518 524anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
617 618parallel
Back to list of sheets
Back to top of page

There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
73 78anti-parallel
Strand 3
B
103 110anti-parallel
Strand 4
B
121 124anti-parallel
Strand 5
B
50 54parallel
Strand 6
B
57 61anti-parallel
Strand 7
B
92 95anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
73 78anti-parallel
Strand 3
B
103 110anti-parallel
Strand 4
B
113 117anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 132first strand
Strand 2
B
561 565anti-parallel
Strand 3
B
551 556anti-parallel
Strand 4
B
528 529anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 132first strand
Strand 2
B
561 565anti-parallel
Strand 3
B
551 556anti-parallel
Strand 4
B
540 542anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
146 147anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 157first strand
Strand 2
B
166 173anti-parallel
Strand 3
B
189 193anti-parallel
Strand 4
B
199 204anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 221first strand
Strand 2
B
230 235anti-parallel
Strand 3
B
267 272anti-parallel
Strand 4
B
278 283anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 310first strand
Strand 2
B
318 323anti-parallel
Strand 3
B
330 337anti-parallel
Strand 4
B
340 348anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 368first strand
Strand 2
B
377 380anti-parallel
Strand 3
B
383 385anti-parallel
Strand 4
B
391 394anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
403 406first strand
Strand 2
B
416 420anti-parallel
Strand 3
B
430 434anti-parallel
Strand 4
B
440 444anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 456first strand
Strand 2
B
466 469anti-parallel
Strand 3
B
472 474anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
491 493first strand
Strand 2
B
502 505anti-parallel
Strand 3
B
508 513anti-parallel
Strand 4
B
518 524anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il