Analysis of interatomic Contacts of Structural Units in PDB entry:
2Z8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Z8U entry

There are 4 chains in PDB entry 2Z8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3GLN 178
B
 PRO 3VAL 177
P
 GLU 4GLU 176
Q
 PRO 3VAL 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2Z8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 29Right-handed alpha
Helix 2
2
A
68 86Right-handed alpha
Helix 3
3
A
112 120Right-handed alpha
Helix 4
4
A
159 178Right-handed alpha
Helix 5
5
B
21 29Right-handed alpha
Helix 6
6
B
68 87Right-handed alpha
Helix 7
7
B
112 120Right-handed alpha
Helix 8
8
B
159 176Right-handed alpha
Helix 9
9
P
21 29Right-handed alpha
Helix 10
10
P
68 87Right-handed alpha
Helix 11
11
P
112 120Right-handed alpha
Helix 12
12
P
159 176Right-handed alpha
Helix 13
13
Q
21 29Right-handed alpha
Helix 14
14
Q
68 86Right-handed alpha
Helix 15
15
Q
112 120Right-handed alpha
Helix 16
16
Q
159 177Right-handed alpha
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There are 4 sheets in PDB entry 2Z8U. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
60 66anti-parallel
Strand 4
A
6 15anti-parallel
Strand 5
A
97 106anti-parallel
Strand 6
A
151 155anti-parallel
Strand 7
A
142 146anti-parallel
Strand 8
A
133 137anti-parallel
Strand 9
A
123 125anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
42 46anti-parallel
Strand 3
B
51 55anti-parallel
Strand 4
B
60 64anti-parallel
Strand 5
B
6 15anti-parallel
Strand 6
B
97 106anti-parallel
Strand 7
B
151 155anti-parallel
Strand 8
B
142 146anti-parallel
Strand 9
B
133 137anti-parallel
Strand 10
B
123 125anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
32 33first strand
Strand 2
P
42 46anti-parallel
Strand 3
P
51 55anti-parallel
Strand 4
P
60 64anti-parallel
Strand 5
P
6 15anti-parallel
Strand 6
P
97 106anti-parallel
Strand 7
P
151 155anti-parallel
Strand 8
P
142 146anti-parallel
Strand 9
P
133 137anti-parallel
Strand 10
P
123 124anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
32 33first strand
Strand 2
Q
42 46anti-parallel
Strand 3
Q
51 55anti-parallel
Strand 4
Q
60 64anti-parallel
Strand 5
Q
6 15anti-parallel
Strand 6
Q
97 106anti-parallel
Strand 7
Q
151 157anti-parallel
Strand 8
Q
142 146anti-parallel
Strand 9
Q
133 137anti-parallel
Strand 10
Q
123 124anti-parallel
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