Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZD7 entry

There are 3 chains in PDB entry 2ZD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4ASP 225
B
 GLU 10GLU 227
C
 GLU 247SER 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2ZD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 52Right-handed alpha
Helix 2
2
A
56 65Right-handed alpha
Helix 3
3
A
67 72Right-handed 310
Helix 4
4
A
73 75Right-handed 310
Helix 5
5
A
76 81Right-handed alpha
Helix 6
6
A
92 94Right-handed 310
Helix 7
7
A
149 156Right-handed 310
Helix 8
8
A
165 177Right-handed alpha
Helix 9
9
A
178 183Right-handed alpha
Helix 10
10
A
196 207Right-handed alpha
Helix 11
11
A
207 222Right-handed alpha
Helix 12
12
B
11 52Right-handed alpha
Helix 13
13
B
56 65Right-handed alpha
Helix 14
14
B
67 72Right-handed alpha
Helix 15
15
B
73 75Right-handed 310
Helix 16
16
B
76 81Right-handed alpha
Helix 17
17
B
92 94Right-handed 310
Helix 18
18
B
149 153Right-handed 310
Helix 19
19
B
165 177Right-handed alpha
Helix 20
20
B
178 183Right-handed alpha
Helix 21
21
B
196 207Right-handed alpha
Helix 22
22
B
207 226Right-handed alpha
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There are 2 sheets in PDB entry 2ZD7. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 90first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
119 128anti-parallel
Strand 4
A
138 141anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 90first strand
Strand 2
B
103 109anti-parallel
Strand 3
B
119 128anti-parallel
Strand 4
B
138 141anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il