Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZDY entry

There are 2 chains in PDB entry 2ZDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 19TYR 386
B
 PRO 21PRO 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2ZDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 28Right-handed alpha
Helix 2
2
A
36 43Right-handed alpha
Helix 3
3
A
49 74Right-handed alpha
Helix 4
4
A
76 81Right-handed alpha
Helix 5
5
A
82 101Right-handed alpha
Helix 6
6
A
109 127Right-handed alpha
Helix 7
7
A
129 142Right-handed alpha
Helix 8
8
A
152 181Right-handed alpha
Helix 9
9
A
200 220Right-handed alpha
Helix 10
10
A
244 267Right-handed alpha
Helix 11
11
A
299 301Right-handed 310
Helix 12
12
A
302 307Right-handed alpha
Helix 13
13
A
332 344Right-handed alpha
Helix 14
14
A
367 371Right-handed 310
Helix 15
15
A
379 386Right-handed alpha
Helix 16
16
B
21 28Right-handed alpha
Helix 17
17
B
36 43Right-handed alpha
Helix 18
18
B
49 73Right-handed alpha
Helix 19
19
B
76 81Right-handed alpha
Helix 20
20
B
82 101Right-handed alpha
Helix 21
21
B
102 104Right-handed 310
Helix 22
22
B
109 127Right-handed alpha
Helix 23
23
B
129 145Right-handed alpha
Helix 24
24
B
148 181Right-handed alpha
Helix 25
25
B
200 220Right-handed alpha
Helix 26
26
B
244 267Right-handed alpha
Helix 27
27
B
302 307Right-handed alpha
Helix 28
28
B
332 344Right-handed alpha
Helix 29
29
B
379 386Right-handed alpha
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There are 4 sheets in PDB entry 2ZDY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 199first strand
Strand 2
A
240 243anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 231first strand
Strand 2
A
276 282parallel
Strand 3
A
286 292anti-parallel
Strand 4
A
357 365anti-parallel
Strand 5
A
347 353anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 199first strand
Strand 2
B
240 243anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 231first strand
Strand 2
B
276 282parallel
Strand 3
B
286 293anti-parallel
Strand 4
B
357 365anti-parallel
Strand 5
B
347 353anti-parallel
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