Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZEB entry

There are 4 chains in PDB entry 2ZEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1LYS 243
B
 ILE 1LYS 243
C
 ILE 1LYS 243
D
 ILE 1LYS 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 2ZEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 47Right-handed alpha
Helix 2
2
A
52 54Right-handed 310
Helix 3
3
A
154 164Right-handed alpha
Helix 4
4
A
233 239Right-handed alpha
Helix 5
5
B
42 46Right-handed 310
Helix 6
6
B
52 54Right-handed 310
Helix 7
7
B
154 164Right-handed alpha
Helix 8
8
B
233 239Right-handed alpha
Helix 9
9
C
42 46Right-handed 310
Helix 10
10
C
52 54Right-handed 310
Helix 11
11
C
154 164Right-handed alpha
Helix 12
12
C
233 239Right-handed alpha
Helix 13
13
D
42 46Right-handed 310
Helix 14
14
D
52 54Right-handed 310
Helix 15
15
D
154 164Right-handed alpha
Helix 16
16
D
233 241Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 2ZEB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
146 149anti-parallel
Strand 3
A
125 129anti-parallel
Strand 4
A
197 202anti-parallel
Strand 5
A
205 214anti-parallel
Strand 6
A
225 229anti-parallel
Strand 7
A
179 182anti-parallel
Strand 8
A
152 153anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
15 20anti-parallel
Strand 3
A
26 35anti-parallel
Strand 4
A
38 41anti-parallel
Strand 5
A
93 97anti-parallel
Strand 6
A
74 79anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
146 149anti-parallel
Strand 3
B
125 129anti-parallel
Strand 4
B
197 202anti-parallel
Strand 5
B
205 214anti-parallel
Strand 6
B
225 229anti-parallel
Strand 7
B
179 182anti-parallel
Strand 8
B
152 153anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 20first strand
Strand 2
B
26 35anti-parallel
Strand 3
B
38 41anti-parallel
Strand 4
B
93 97anti-parallel
Strand 5
B
72 79anti-parallel
Strand 6
B
56 59anti-parallel
Strand 7
B
15 20anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
146 149anti-parallel
Strand 3
C
125 129anti-parallel
Strand 4
C
197 201anti-parallel
Strand 5
C
206 214anti-parallel
Strand 6
C
225 229anti-parallel
Strand 7
C
179 182anti-parallel
Strand 8
C
152 153anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 60first strand
Strand 2
C
15 20anti-parallel
Strand 3
C
26 35anti-parallel
Strand 4
C
38 41anti-parallel
Strand 5
C
93 97anti-parallel
Strand 6
C
74 79anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
146 149anti-parallel
Strand 3
D
125 129anti-parallel
Strand 4
D
197 202anti-parallel
Strand 5
D
205 214anti-parallel
Strand 6
D
225 229anti-parallel
Strand 7
D
179 182anti-parallel
Strand 8
D
152 153anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 20first strand
Strand 2
D
26 35anti-parallel
Strand 3
D
38 41anti-parallel
Strand 4
D
93 97anti-parallel
Strand 5
D
72 79anti-parallel
Strand 6
D
56 59anti-parallel
Strand 7
D
15 20anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il