Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZMF entry

There are 2 chains in PDB entry 2ZMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 246ARG 422
B
 GLU 248HIS 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2ZMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
246 263Right-handed alpha
Helix 2
2
A
266 283Right-handed alpha
Helix 3
3
A
328 338Right-handed alpha
Helix 4
4
A
345 349Right-handed 310
Helix 5
5
A
354 361Right-handed alpha
Helix 6
6
A
394 420Right-handed alpha
Helix 7
7
B
248 258Right-handed alpha
Helix 8
8
B
262 282Right-handed alpha
Helix 9
9
B
328 338Right-handed alpha
Helix 10
10
B
345 349Right-handed 310
Helix 11
11
B
354 361Right-handed alpha
Helix 12
12
B
394 404Right-handed alpha
Helix 13
13
B
404 418Right-handed alpha
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There are 5 sheets in PDB entry 2ZMF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
298 304anti-parallel
Strand 3
A
323 325anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
298 304anti-parallel
Strand 3
A
284 293anti-parallel
Strand 4
A
377 387anti-parallel
Strand 5
A
367 374anti-parallel
Strand 6
A
341 343anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
313 314anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 318first strand
Strand 2
B
298 309anti-parallel
Strand 3
B
323 325anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 318first strand
Strand 2
B
298 309anti-parallel
Strand 3
B
284 293anti-parallel
Strand 4
B
377 387anti-parallel
Strand 5
B
367 374anti-parallel
Strand 6
B
341 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il