Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZNM entry

There are 4 chains in PDB entry 2ZNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LYS 187
B
 LEU 3LYS 187
C
 LEU 3ARG 188
D
 LEU 3ARG 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2ZNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 51Right-handed alpha
Helix 2
2
A
65 67Right-handed 310
Helix 3
3
A
68 82Right-handed alpha
Helix 4
4
A
83 98Right-handed alpha
Helix 5
5
A
104 114Right-handed alpha
Helix 6
6
A
119 128Right-handed alpha
Helix 7
7
A
129 146Right-handed alpha
Helix 8
8
A
166 186Right-handed alpha
Helix 9
9
B
41 51Right-handed alpha
Helix 10
10
B
65 67Right-handed 310
Helix 11
11
B
68 81Right-handed alpha
Helix 12
12
B
83 98Right-handed alpha
Helix 13
13
B
104 114Right-handed alpha
Helix 14
14
B
119 128Right-handed alpha
Helix 15
15
B
129 146Right-handed alpha
Helix 16
16
B
166 186Right-handed alpha
Helix 17
17
C
41 51Right-handed alpha
Helix 18
18
C
65 67Right-handed 310
Helix 19
19
C
68 81Right-handed alpha
Helix 20
20
C
83 98Right-handed alpha
Helix 21
21
C
104 114Right-handed alpha
Helix 22
22
C
119 128Right-handed alpha
Helix 23
23
C
129 146Right-handed alpha
Helix 24
24
C
166 186Right-handed alpha
Helix 25
25
D
41 51Right-handed alpha
Helix 26
26
D
65 67Right-handed 310
Helix 27
27
D
68 81Right-handed alpha
Helix 28
28
D
83 98Right-handed alpha
Helix 29
29
D
104 115Right-handed alpha
Helix 30
30
D
119 128Right-handed alpha
Helix 31
31
D
129 147Right-handed alpha
Helix 32
32
D
168 186Right-handed alpha
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There are 4 sheets in PDB entry 2ZNM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
160 162anti-parallel
Strand 3
A
153 156anti-parallel
Strand 4
A
24 30anti-parallel
Strand 5
A
55 61parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
160 162anti-parallel
Strand 3
B
153 156anti-parallel
Strand 4
B
24 30anti-parallel
Strand 5
B
55 61parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 11first strand
Strand 2
C
160 162anti-parallel
Strand 3
C
153 156anti-parallel
Strand 4
C
24 30anti-parallel
Strand 5
C
55 61parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 11first strand
Strand 2
D
160 162anti-parallel
Strand 3
D
153 156anti-parallel
Strand 4
D
24 30anti-parallel
Strand 5
D
55 61parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il