Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZOO entry

There is 1 chain in PDB entry 2ZOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4ARG 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2ZOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 101Right-handed 310
Helix 2
2
A
129 136Right-handed alpha
Helix 3
3
A
179 185Right-handed alpha
Helix 4
4
A
201 205Right-handed 310
Helix 5
5
A
242 244Right-handed 310
Helix 6
6
A
281 286Right-handed alpha
Helix 7
7
A
334 350Right-handed alpha
Helix 8
8
A
350 355Right-handed alpha
Helix 9
9
A
371 377Right-handed alpha
Helix 10
10
A
377 388Right-handed alpha
Helix 11
11
A
410 423Right-handed alpha
Helix 12
12
A
433 441Right-handed alpha
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There are 7 sheets in PDB entry 2ZOO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
28 43parallel
Strand 3
A
69 76parallel
Strand 4
A
108 114anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
28 43parallel
Strand 3
A
46 53anti-parallel
Strand 4
A
174 176parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
139 145parallel
Strand 3
A
119 124anti-parallel
Strand 4
A
87 88anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
155 164anti-parallel
Strand 3
A
213 222parallel
Strand 4
A
260 267anti-parallel
Strand 5
A
238 240anti-parallel
Strand 6
A
247 248anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 209first strand
Strand 2
A
290 296parallel
Strand 3
A
272 278anti-parallel
Strand 4
A
227 232anti-parallel
Strand 5
A
253 256anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
403 404anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
398 400anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il