Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2ZVF entry

There are 8 chains in PDB entry 2ZVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 737	GLY 906
B	GLY 737	GLY 906
C	ALA 739	HIS 904
D	MSE 0	GLU 905
E	MSE 0	GLU 905
F	MSE 0	GLU 903
G	GLY 737	GLY 906
H	MSE 0	GLY 906

There are 49 helices in PDB entry 2ZVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	737	740	Right-handed 310
Helix 2	2	A	741	757	Right-handed alpha
Helix 3	3	A	764	800	Right-handed alpha
Helix 4	4	A	818	832	Right-handed alpha
Helix 5	5	A	857	870	Right-handed alpha
Helix 6	6	A	889	905	Right-handed alpha
Helix 7	7	B	737	758	Right-handed alpha
Helix 8	8	B	761	763	Right-handed 310
Helix 9	9	B	764	800	Right-handed alpha
Helix 10	10	B	818	832	Right-handed alpha
Helix 11	11	B	857	870	Right-handed alpha
Helix 12	12	B	889	904	Right-handed alpha
Helix 13	13	B	905	906	Right-handed 310
Helix 14	14	C	739	740	Right-handed 310
Helix 15	15	C	741	758	Right-handed alpha
Helix 16	16	C	761	763	Right-handed 310
Helix 17	17	C	764	801	Right-handed alpha
Helix 18	18	C	818	831	Right-handed alpha
Helix 19	19	C	857	870	Right-handed alpha
Helix 20	20	C	889	904	Right-handed alpha
Helix 21	21	D	0	758	Right-handed alpha
Helix 22	22	D	761	763	Right-handed 310
Helix 23	23	D	764	802	Right-handed alpha
Helix 24	24	D	818	832	Right-handed alpha
Helix 25	25	D	857	870	Right-handed alpha
Helix 26	26	D	889	905	Right-handed alpha
Helix 27	27	E	738	758	Right-handed alpha
Helix 28	28	E	761	763	Right-handed 310
Helix 29	29	E	764	799	Right-handed alpha
Helix 30	30	E	818	832	Right-handed alpha
Helix 31	31	E	857	870	Right-handed alpha
Helix 32	32	E	889	903	Right-handed alpha
Helix 33	33	F	737	758	Right-handed alpha
Helix 34	34	F	764	797	Right-handed alpha
Helix 35	35	F	798	802	Right-handed 310
Helix 36	36	F	818	832	Right-handed alpha
Helix 37	37	F	857	865	Right-handed alpha
Helix 38	38	F	889	902	Right-handed alpha
Helix 39	39	G	737	758	Right-handed alpha
Helix 40	40	G	761	763	Right-handed 310
Helix 41	41	G	764	798	Right-handed alpha
Helix 42	42	G	818	831	Right-handed alpha
Helix 43	43	G	857	869	Right-handed alpha
Helix 44	44	G	889	905	Right-handed alpha
Helix 45	45	H	738	758	Right-handed alpha
Helix 46	46	H	764	801	Right-handed alpha
Helix 47	47	H	818	832	Right-handed alpha
Helix 48	48	H	857	870	Right-handed alpha
Helix 49	49	H	889	903	Right-handed alpha

There are 9 sheets in PDB entry 2ZVF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	804	first strand
Strand 2	A	809	814	anti-parallel
Strand 3	A	834	841	parallel
Strand 4	A	846	852	anti-parallel
Strand 5	A	879	884	anti-parallel
Strand 6	A	871	872	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	803	805	first strand
Strand 2	B	808	814	anti-parallel
Strand 3	B	834	841	parallel
Strand 4	B	846	852	anti-parallel
Strand 5	B	879	884	anti-parallel
Strand 6	B	871	875	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	803	804	first strand
Strand 2	C	809	814	anti-parallel
Strand 3	C	835	841	parallel
Strand 4	C	846	852	anti-parallel
Strand 5	C	879	884	anti-parallel
Strand 6	C	872	875	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	803	805	first strand
Strand 2	D	808	814	anti-parallel
Strand 3	D	835	842	parallel
Strand 4	D	845	852	anti-parallel
Strand 5	D	879	884	anti-parallel
Strand 6	D	871	872	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	803	805	first strand
Strand 2	E	808	814	anti-parallel
Strand 3	E	834	841	parallel
Strand 4	E	846	852	anti-parallel
Strand 5	E	879	884	anti-parallel
Strand 6	E	871	875	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	803	804	first strand
Strand 2	F	809	811	anti-parallel
Strand 3	F	835	837	parallel
Strand 4	F	846	851	anti-parallel
Strand 5	F	839	841	anti-parallel
Strand 6	F	814	815	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	803	804	first strand
Strand 2	F	809	811	anti-parallel
Strand 3	F	835	837	parallel
Strand 4	F	846	851	anti-parallel
Strand 5	F	879	884	anti-parallel
Strand 6	F	874	875	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	803	805	first strand
Strand 2	G	808	815	anti-parallel
Strand 3	G	835	841	parallel
Strand 4	G	846	852	anti-parallel
Strand 5	G	879	884	anti-parallel
Strand 6	G	871	875	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	803	805	first strand
Strand 2	H	808	814	anti-parallel
Strand 3	H	834	841	parallel
Strand 4	H	846	852	anti-parallel
Strand 5	H	879	884	anti-parallel
Strand 6	H	871	875	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2ZVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZVF