Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZYQ entry

There are 2 chains in PDB entry 2ZYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 297
B
 SER 2GLY 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 2ZYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 26Right-handed alpha
Helix 2
2
A
70 85Right-handed alpha
Helix 3
3
A
92 100Right-handed alpha
Helix 4
4
A
138 142Right-handed 310
Helix 5
5
A
152 162Right-handed alpha
Helix 6
6
A
175 180Right-handed 310
Helix 7
7
A
222 236Right-handed alpha
Helix 8
8
B
15 26Right-handed alpha
Helix 9
9
B
70 85Right-handed alpha
Helix 10
10
B
92 100Right-handed alpha
Helix 11
11
B
138 142Right-handed 310
Helix 12
12
B
152 161Right-handed alpha
Helix 13
13
B
175 180Right-handed 310
Helix 14
14
B
222 236Right-handed alpha
Helix 15
15
B
293 297Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 2ZYQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
40 43anti-parallel
Strand 3
A
51 55anti-parallel
Strand 4
A
5 13parallel
Strand 5
A
60 67anti-parallel
Strand 6
A
114 119parallel
Strand 7
A
103 108anti-parallel
Strand 8
A
89 90anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
167 174parallel
Strand 3
A
188 194anti-parallel
Strand 4
A
202 205anti-parallel
Strand 5
A
145 149parallel
Strand 6
A
213 219anti-parallel
Strand 7
A
264 269parallel
Strand 8
A
253 258anti-parallel
Strand 9
A
240 247anti-parallel
Strand 10
A
288 291anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
40 43anti-parallel
Strand 3
B
51 55anti-parallel
Strand 4
B
3 13parallel
Strand 5
B
60 68anti-parallel
Strand 6
B
114 119parallel
Strand 7
B
103 108anti-parallel
Strand 8
B
89 90anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 283first strand
Strand 2
B
167 174parallel
Strand 3
B
188 194anti-parallel
Strand 4
B
202 205anti-parallel
Strand 5
B
145 149parallel
Strand 6
B
213 219anti-parallel
Strand 7
B
264 269parallel
Strand 8
B
253 258anti-parallel
Strand 9
B
240 247anti-parallel
Strand 10
B
288 291anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il