Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZYR entry

There are 2 chains in PDB entry 2ZYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 21HIS 484
B
 ASP 21ILE 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 2ZYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 37Right-handed 310
Helix 2
2
A
38 48Right-handed alpha
Helix 3
3
A
51 53Right-handed 310
Helix 4
4
A
61 69Right-handed alpha
Helix 5
5
A
77 79Right-handed 310
Helix 6
6
A
80 87Right-handed alpha
Helix 7
7
A
88 90Right-handed 310
Helix 8
8
A
91 100Right-handed alpha
Helix 9
9
A
102 126Right-handed alpha
Helix 10
10
A
136 148Right-handed alpha
Helix 11
11
A
149 155Right-handed alpha
Helix 12
12
A
183 186Right-handed 310
Helix 13
13
A
209 216Right-handed alpha
Helix 14
14
A
216 229Right-handed alpha
Helix 15
15
A
337 341Right-handed 310
Helix 16
16
A
342 347Right-handed alpha
Helix 17
17
A
348 353Right-handed 310
Helix 18
18
A
393 397Right-handed 310
Helix 19
19
A
405 409Right-handed 310
Helix 20
20
A
418 422Right-handed 310
Helix 21
21
A
476 484Right-handed alpha
Helix 22
22
B
34 37Right-handed 310
Helix 23
23
B
38 48Right-handed alpha
Helix 24
24
B
51 53Right-handed 310
Helix 25
25
B
61 69Right-handed alpha
Helix 26
26
B
79 88Right-handed alpha
Helix 27
27
B
91 100Right-handed alpha
Helix 28
28
B
102 126Right-handed alpha
Helix 29
29
B
136 148Right-handed alpha
Helix 30
30
B
149 155Right-handed alpha
Helix 31
31
B
182 190Right-handed 310
Helix 32
32
B
209 216Right-handed alpha
Helix 33
33
B
216 229Right-handed alpha
Helix 34
34
B
337 341Right-handed 310
Helix 35
35
B
342 347Right-handed alpha
Helix 36
36
B
348 353Right-handed 310
Helix 37
37
B
393 397Right-handed 310
Helix 38
38
B
405 409Right-handed 310
Helix 39
39
B
418 422Right-handed 310
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There are 8 sheets in PDB entry 2ZYR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
25 28parallel
Strand 3
A
130 135parallel
Strand 4
A
156 162parallel
Strand 5
A
176 181parallel
Strand 6
A
201 205parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 295first strand
Strand 2
A
244 253anti-parallel
Strand 3
A
324 331parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 287first strand
Strand 2
A
261 268anti-parallel
Strand 3
A
300 306anti-parallel
Strand 4
A
312 317anti-parallel
Strand 5
A
464 469parallel
Strand 6
A
357 365parallel
Strand 7
A
398 404anti-parallel
Strand 8
A
427 431parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
378 381anti-parallel
Strand 3
A
439 445anti-parallel
Strand 4
A
451 457anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
25 28parallel
Strand 3
B
130 135parallel
Strand 4
B
156 162parallel
Strand 5
B
176 180parallel
Strand 6
B
201 204parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 295first strand
Strand 2
B
244 253anti-parallel
Strand 3
B
324 331parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 287first strand
Strand 2
B
261 268anti-parallel
Strand 3
B
300 306anti-parallel
Strand 4
B
312 317anti-parallel
Strand 5
B
464 469parallel
Strand 6
B
357 360parallel
Strand 7
B
400 404anti-parallel
Strand 8
B
427 431parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 385first strand
Strand 2
B
378 381anti-parallel
Strand 3
B
439 445anti-parallel
Strand 4
B
451 457anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il