Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZYZ entry

There are 4 chains in PDB entry 2ZYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 93
B
 MET 1LEU 183
C
 MET 1VAL 96
D
 MET 1LEU 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2ZYZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
48 63Right-handed alpha
Helix 3
3
B
14 24Right-handed alpha
Helix 4
4
B
37 44Right-handed 310
Helix 5
5
B
52 61Right-handed alpha
Helix 6
6
B
75 87Right-handed alpha
Helix 7
7
B
89 103Right-handed alpha
Helix 8
8
B
111 114Right-handed 310
Helix 9
9
B
143 154Right-handed alpha
Helix 10
10
C
2 15Right-handed alpha
Helix 11
11
C
48 62Right-handed alpha
Helix 12
12
D
14 24Right-handed alpha
Helix 13
13
D
39 44Right-handed 310
Helix 14
14
D
52 61Right-handed alpha
Helix 15
15
D
75 87Right-handed alpha
Helix 16
16
D
89 103Right-handed alpha
Helix 17
17
D
111 114Right-handed 310
Helix 18
18
D
143 154Right-handed alpha
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There are 4 sheets in PDB entry 2ZYZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 24first strand
Strand 2
A
27 31anti-parallel
Strand 3
A
35 42anti-parallel
Strand 4
A
66 71parallel
Strand 5
A
77 84anti-parallel
Strand 6
B
173 180anti-parallel
Strand 7
B
161 166anti-parallel
Strand 8
B
131 135parallel
Strand 9
B
117 120anti-parallel
Strand 10
B
106 109anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
48 51anti-parallel
Strand 3
B
9 12anti-parallel
Strand 4
B
2 5anti-parallel
Strand 5
B
65 67parallel
Strand 6
B
73 74anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 24first strand
Strand 2
C
27 31anti-parallel
Strand 3
C
35 42anti-parallel
Strand 4
C
66 71parallel
Strand 5
C
77 84anti-parallel
Strand 6
D
173 180anti-parallel
Strand 7
D
161 166anti-parallel
Strand 8
D
131 135parallel
Strand 9
D
117 120anti-parallel
Strand 10
D
106 109anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 30first strand
Strand 2
D
48 51anti-parallel
Strand 3
D
9 12anti-parallel
Strand 4
D
2 5anti-parallel
Strand 5
D
65 67parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il