Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZZM entry

There are 5 chains in PDB entry 2ZZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2SER 81
A
 TYR 84LEU 232
A
 LYS 234VAL 317
A
 SER 319ASN 334
B
 G 1 C 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2ZZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 22Right-handed alpha
Helix 2
2
A
46 54Right-handed alpha
Helix 3
3
A
75 84Right-handed alpha
Helix 4
4
A
84 90Right-handed alpha
Helix 5
5
A
113 128Right-handed alpha
Helix 6
6
A
179 181Right-handed 310
Helix 7
7
A
182 191Right-handed alpha
Helix 8
8
A
207 212Right-handed alpha
Helix 9
9
A
225 239Right-handed alpha
Helix 10
10
A
251 255Right-handed 310
Helix 11
11
A
270 272Right-handed 310
Helix 12
12
A
273 280Right-handed alpha
Helix 13
13
A
296 305Right-handed alpha
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There are 4 sheets in PDB entry 2ZZM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
37 41anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
103 106anti-parallel
Strand 3
A
132 136parallel
Strand 4
A
149 154anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 164first strand
Strand 2
A
167 172anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
218 223parallel
Strand 3
A
198 201parallel
Strand 4
A
259 264parallel
Strand 5
A
281 293parallel
Strand 6
A
325 333anti-parallel
Strand 7
A
309 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il