Analysis of interatomic Contacts of Structural Units in PDB entry:
30AD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 30AD entry

There are 4 chains in PDB entry 30AD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 230	PRO 545
B	THR 230	PRO 545
H	GLN 1	VAL 216
L	ALA 1	CYS 214

There are 19 helices in PDB entry 30AD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	276	278	Right-handed 310
Helix 2	AA2	A	301	306	Right-handed alpha
Helix 3	AA3	A	332	336	Right-handed 310
Helix 4	AA4	A	344	350	Right-handed alpha
Helix 5	AA5	A	364	368	Right-handed 310
Helix 6	AA6	A	406	412	Right-handed alpha
Helix 7	AA7	A	513	519	Right-handed alpha
Helix 8	AA8	B	276	278	Right-handed 310
Helix 9	AA9	B	301	306	Right-handed alpha
Helix 10	AB1	B	344	350	Right-handed alpha
Helix 11	AB2	B	406	412	Right-handed alpha
Helix 12	AB3	B	486	488	Right-handed 310
Helix 13	AB4	B	513	519	Right-handed alpha
Helix 14	AB5	H	87	91	Right-handed 310
Helix 15	AB6	H	164	166	Right-handed 310
Helix 16	AB7	H	206	209	Right-handed 310
Helix 17	AB8	L	79	83	Right-handed 310
Helix 18	AB9	L	124	130	Right-handed alpha
Helix 19	AC1	L	185	190	Right-handed alpha

There are 23 sheets in PDB entry 30AD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	287	first strand
Strand 2	A	290	300	anti-parallel
Strand 3	A	250	259	anti-parallel
Strand 4	A	233	239	anti-parallel
Strand 5	B	234	239	anti-parallel
Strand 6	B	250	259	anti-parallel
Strand 7	B	290	300	anti-parallel
Strand 8	B	280	287	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	264	270	anti-parallel
Strand 3	A	310	316	anti-parallel
Strand 4	A	319	325	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	340	first strand
Strand 2	A	355	363	anti-parallel
Strand 3	A	397	404	anti-parallel
Strand 4	A	386	391	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	376	first strand
Strand 2	A	416	421	anti-parallel
Strand 3	A	429	433	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	449	first strand
Strand 2	A	459	469	anti-parallel
Strand 3	A	503	512	anti-parallel
Strand 4	A	490	492	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	449	first strand
Strand 2	A	459	469	anti-parallel
Strand 3	A	503	512	anti-parallel
Strand 4	A	496	497	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	475	480	anti-parallel
Strand 3	A	522	527	anti-parallel
Strand 4	A	536	541	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	274	first strand
Strand 2	B	264	270	anti-parallel
Strand 3	B	310	316	anti-parallel
Strand 4	B	319	325	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	355	363	anti-parallel
Strand 3	B	397	404	anti-parallel
Strand 4	B	386	391	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	376	first strand
Strand 2	B	415	421	anti-parallel
Strand 3	B	429	434	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	449	first strand
Strand 2	B	459	469	anti-parallel
Strand 3	B	503	512	anti-parallel
Strand 4	B	490	492	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	449	first strand
Strand 2	B	459	469	anti-parallel
Strand 3	B	503	512	anti-parallel
Strand 4	B	496	497	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	B	474	480	anti-parallel
Strand 3	B	522	528	anti-parallel
Strand 4	B	536	541	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	46	53	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	110	111	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	171	173	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	177	178	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	199	205	anti-parallel
Strand 3	H	210	216	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	18	25	anti-parallel
Strand 3	L	70	76	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	105	110	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	121	first strand
Strand 2	L	132	142	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	161	166	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	157	first strand
Strand 2	L	147	152	anti-parallel
Strand 3	L	193	200	anti-parallel
Strand 4	L	203	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 30AD

Analysis of interatomic Contacts of Structural Units in PDB entry:
30AD