Analysis of interatomic Contacts of Structural Units in PDB entry:
30ID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 30ID entry

There are 4 chains in PDB entry 30ID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 48	THR 312
B	LYS 48	THR 312
C	LYS 48	THR 312
D	LYS 48	THR 312

There are 48 helices in PDB entry 30ID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	68	Right-handed 310
Helix 2	AA2	A	104	113	Right-handed alpha
Helix 3	AA3	A	113	118	Right-handed alpha
Helix 4	AA4	A	118	124	Right-handed alpha
Helix 5	AA5	A	146	165	Right-handed alpha
Helix 6	AA6	A	179	183	Right-handed 310
Helix 7	AA7	A	189	202	Right-handed alpha
Helix 8	AA8	A	212	217	Right-handed alpha
Helix 9	AA9	A	227	230	Right-handed 310
Helix 10	AB1	A	249	251	Right-handed 310
Helix 11	AB2	A	264	278	Right-handed alpha
Helix 12	AB3	A	293	306	Right-handed alpha
Helix 13	AB4	B	63	68	Right-handed 310
Helix 14	AB5	B	104	113	Right-handed alpha
Helix 15	AB6	B	113	118	Right-handed alpha
Helix 16	AB7	B	118	124	Right-handed alpha
Helix 17	AB8	B	146	165	Right-handed alpha
Helix 18	AB9	B	179	183	Right-handed 310
Helix 19	AC1	B	189	202	Right-handed alpha
Helix 20	AC2	B	212	217	Right-handed alpha
Helix 21	AC3	B	227	230	Right-handed 310
Helix 22	AC4	B	249	251	Right-handed 310
Helix 23	AC5	B	264	279	Right-handed alpha
Helix 24	AC6	B	293	306	Right-handed alpha
Helix 25	AC7	C	63	68	Right-handed 310
Helix 26	AC8	C	104	113	Right-handed alpha
Helix 27	AC9	C	113	118	Right-handed alpha
Helix 28	AD1	C	118	124	Right-handed alpha
Helix 29	AD2	C	146	165	Right-handed alpha
Helix 30	AD3	C	179	183	Right-handed 310
Helix 31	AD4	C	189	202	Right-handed alpha
Helix 32	AD5	C	212	217	Right-handed alpha
Helix 33	AD6	C	227	230	Right-handed 310
Helix 34	AD7	C	249	251	Right-handed 310
Helix 35	AD8	C	264	278	Right-handed alpha
Helix 36	AD9	C	293	306	Right-handed alpha
Helix 37	AE1	D	63	68	Right-handed 310
Helix 38	AE2	D	104	113	Right-handed alpha
Helix 39	AE3	D	113	118	Right-handed alpha
Helix 40	AE4	D	118	124	Right-handed alpha
Helix 41	AE5	D	146	165	Right-handed alpha
Helix 42	AE6	D	179	183	Right-handed 310
Helix 43	AE7	D	189	202	Right-handed alpha
Helix 44	AE8	D	212	217	Right-handed alpha
Helix 45	AE9	D	227	230	Right-handed 310
Helix 46	AF1	D	249	251	Right-handed 310
Helix 47	AF2	D	264	278	Right-handed alpha
Helix 48	AF3	D	293	306	Right-handed alpha

There are 16 sheets in PDB entry 30ID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	102	first strand
Strand 2	A	82	93	anti-parallel
Strand 3	A	127	134	parallel
Strand 4	A	168	172	parallel
Strand 5	A	206	210	parallel
Strand 6	A	232	234	parallel
Strand 7	A	253	254	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	102	first strand
Strand 2	A	82	93	anti-parallel
Strand 3	A	52	58	parallel
Strand 4	A	282	286	parallel
Strand 5	A	257	259	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	A	309	311	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	224	225	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	82	93	anti-parallel
Strand 3	B	127	134	parallel
Strand 4	B	168	172	parallel
Strand 5	B	206	210	parallel
Strand 6	B	232	234	parallel
Strand 7	B	253	254	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	82	93	anti-parallel
Strand 3	B	52	58	parallel
Strand 4	B	282	286	parallel
Strand 5	B	257	259	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	309	311	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	221	first strand
Strand 2	B	224	225	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	102	first strand
Strand 2	C	82	93	anti-parallel
Strand 3	C	52	58	parallel
Strand 4	C	282	286	parallel
Strand 5	C	256	259	parallel
Strand 6	C	240	241	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	102	first strand
Strand 2	C	82	93	anti-parallel
Strand 3	C	127	134	parallel
Strand 4	C	168	172	parallel
Strand 5	C	206	210	parallel
Strand 6	C	232	234	parallel
Strand 7	C	253	254	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	72	first strand
Strand 2	C	309	311	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	224	225	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	102	first strand
Strand 2	D	82	93	anti-parallel
Strand 3	D	127	134	parallel
Strand 4	D	168	172	parallel
Strand 5	D	206	210	parallel
Strand 6	D	232	234	parallel
Strand 7	D	253	254	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	102	first strand
Strand 2	D	82	93	anti-parallel
Strand 3	D	52	58	parallel
Strand 4	D	282	286	parallel
Strand 5	D	257	259	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	309	311	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	221	first strand
Strand 2	D	224	225	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 30ID

Analysis of interatomic Contacts of Structural Units in PDB entry:
30ID