Analysis of interatomic Contacts of Structural Units in PDB entry:
30JE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 30JE entry

There are 3 chains in PDB entry 30JE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 95	ARG 340
B	SER 27	THR 647
C	ASP 754	LEU 1502

There are 11 helices in PDB entry 30JE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	177	181	Right-handed 310
Helix 2	AA2	A	278	280	Right-handed 310
Helix 3	AA3	B	285	288	Right-handed 310
Helix 4	AA4	B	303	310	Right-handed alpha
Helix 5	AA5	B	432	436	Right-handed 310
Helix 6	AA6	B	522	526	Right-handed 310
Helix 7	AA7	B	600	606	Right-handed alpha
Helix 8	AA8	B	612	624	Right-handed alpha
Helix 9	AA9	B	635	642	Right-handed alpha
Helix 10	AB1	C	1416	1424	Right-handed alpha
Helix 11	AB2	C	1497	1501	Right-handed 310

There are 30 sheets in PDB entry 30JE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	196	199	anti-parallel
Strand 3	A	186	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	253	255	anti-parallel
Strand 3	A	294	299	anti-parallel
Strand 4	A	282	287	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	268	271	anti-parallel
Strand 3	A	312	317	anti-parallel
Strand 4	A	329	334	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	326	first strand
Strand 2	C	1458	1459	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	28	31	anti-parallel
Strand 3	B	644	647	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	56	61	anti-parallel
Strand 3	B	106	111	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	134	first strand
Strand 2	B	147	152	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	222	224	parallel
Strand 3	B	202	210	anti-parallel
Strand 4	B	162	168	anti-parallel
Strand 5	B	174	177	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	222	224	parallel
Strand 3	B	202	210	anti-parallel
Strand 4	B	162	168	anti-parallel
Strand 5	B	180	181	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	193	194	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	238	first strand
Strand 2	B	251	259	anti-parallel
Strand 3	B	263	264	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	238	first strand
Strand 2	B	251	259	anti-parallel
Strand 3	B	297	302	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	338	349	parallel
Strand 3	B	323	332	anti-parallel
Strand 4	B	274	276	anti-parallel
Strand 5	B	282	283	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	338	349	parallel
Strand 3	B	323	332	anti-parallel
Strand 4	B	267	272	anti-parallel
Strand 5	B	289	293	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	356	first strand
Strand 2	B	369	377	anti-parallel
Strand 3	B	406	412	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	444	445	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	388	391	anti-parallel
Strand 3	B	424	426	anti-parallel
Strand 4	B	438	439	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	459	first strand
Strand 2	B	470	478	anti-parallel
Strand 3	B	514	520	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	507	first strand
Strand 2	B	489	496	anti-parallel
Strand 3	B	528	535	anti-parallel
Strand 4	B	547	554	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	567	first strand
Strand 2	B	580	588	anti-parallel
Strand 3	C	786	794	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	777	first strand
Strand 2	B	591	593	anti-parallel
Strand 3	C	807	810	anti-parallel
Strand 4	C	815	817	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	770	771	first strand
Strand 2	B	596	599	anti-parallel
Strand 3	C	801	805	anti-parallel
Strand 4	C	821	824	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	829	834	first strand
Strand 2	C	845	853	anti-parallel
Strand 3	C	893	894	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	829	834	first strand
Strand 2	C	845	853	anti-parallel
Strand 3	C	897	900	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	838	840	first strand
Strand 2	C	928	932	parallel
Strand 3	C	908	909	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	888	first strand
Strand 2	C	860	866	anti-parallel
Strand 3	C	912	916	anti-parallel
Strand 4	C	922	925	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1367	1369	first strand
Strand 2	C	1384	1386	anti-parallel
Strand 3	C	1462	1465	anti-parallel
Strand 4	C	1411	1412	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1401	1403	first strand
Strand 2	C	1479	1481	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1428	1429	first strand
Strand 2	C	1446	1447	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1475	1477	first strand
Strand 2	C	1491	1493	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 30JE

Analysis of interatomic Contacts of Structural Units in PDB entry:
30JE