Analysis of interatomic Contacts of Structural Units in PDB entry:
30JV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 30JV entry

There are 8 chains in PDB entry 30JV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 12	SER 674
B	ASN 12	SER 674
C	PRO 447	SER 795
D	PRO 447	SER 795
E	C -29	A -1
F	A -3	G 29
G	C -29	A -1
H	A -3	G 29

There are 77 helices in PDB entry 30JV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	43	Right-handed alpha
Helix 2	AA2	A	88	92	Right-handed 310
Helix 3	AA3	A	94	111	Right-handed alpha
Helix 4	AA4	A	119	124	Right-handed alpha
Helix 5	AA5	A	127	138	Right-handed alpha
Helix 6	AA6	A	145	159	Right-handed alpha
Helix 7	AA7	A	163	170	Right-handed alpha
Helix 8	AA8	A	173	187	Right-handed alpha
Helix 9	AA9	A	258	262	Right-handed 310
Helix 10	AB1	A	273	277	Right-handed 310
Helix 11	AB2	A	278	299	Right-handed alpha
Helix 12	AB3	A	304	316	Right-handed alpha
Helix 13	AB4	A	325	339	Right-handed alpha
Helix 14	AB5	A	342	347	Right-handed 310
Helix 15	AB6	A	363	375	Right-handed alpha
Helix 16	AB7	A	381	399	Right-handed alpha
Helix 17	AB8	A	409	419	Right-handed alpha
Helix 18	AB9	A	421	430	Right-handed alpha
Helix 19	AC1	A	431	440	Right-handed alpha
Helix 20	AC2	A	502	515	Right-handed alpha
Helix 21	AC3	A	518	522	Right-handed 310
Helix 22	AC4	A	549	560	Right-handed alpha
Helix 23	AC5	A	572	584	Right-handed alpha
Helix 24	AC6	A	616	630	Right-handed alpha
Helix 25	AC7	A	642	652	Right-handed alpha
Helix 26	AC8	A	660	671	Right-handed alpha
Helix 27	AC9	B	31	43	Right-handed alpha
Helix 28	AD1	B	88	92	Right-handed 310
Helix 29	AD2	B	94	111	Right-handed alpha
Helix 30	AD3	B	119	124	Right-handed alpha
Helix 31	AD4	B	127	138	Right-handed alpha
Helix 32	AD5	B	145	159	Right-handed alpha
Helix 33	AD6	B	163	170	Right-handed alpha
Helix 34	AD7	B	173	187	Right-handed alpha
Helix 35	AD8	B	258	262	Right-handed 310
Helix 36	AD9	B	273	277	Right-handed 310
Helix 37	AE1	B	278	299	Right-handed alpha
Helix 38	AE2	B	304	316	Right-handed alpha
Helix 39	AE3	B	325	339	Right-handed alpha
Helix 40	AE4	B	342	347	Right-handed 310
Helix 41	AE5	B	363	375	Right-handed alpha
Helix 42	AE6	B	381	399	Right-handed alpha
Helix 43	AE7	B	409	419	Right-handed alpha
Helix 44	AE8	B	421	430	Right-handed alpha
Helix 45	AE9	B	431	440	Right-handed alpha
Helix 46	AF1	B	502	515	Right-handed alpha
Helix 47	AF2	B	518	522	Right-handed 310
Helix 48	AF3	B	549	560	Right-handed alpha
Helix 49	AF4	B	572	584	Right-handed alpha
Helix 50	AF5	B	616	630	Right-handed alpha
Helix 51	AF6	B	642	652	Right-handed alpha
Helix 52	AF7	B	660	671	Right-handed alpha
Helix 53	AF8	C	501	515	Right-handed alpha
Helix 54	AF9	C	518	522	Right-handed 310
Helix 55	AG1	C	549	559	Right-handed alpha
Helix 56	AG2	C	572	583	Right-handed alpha
Helix 57	AG3	C	584	588	Right-handed 310
Helix 58	AG4	C	615	630	Right-handed alpha
Helix 59	AG5	C	642	654	Right-handed alpha
Helix 60	AG6	C	660	669	Right-handed alpha
Helix 61	AG7	C	670	672	Right-handed 310
Helix 62	AG8	C	693	703	Right-handed alpha
Helix 63	AG9	C	750	769	Right-handed alpha
Helix 64	AH1	C	770	795	Right-handed alpha
Helix 65	AH2	D	501	515	Right-handed alpha
Helix 66	AH3	D	518	522	Right-handed 310
Helix 67	AH4	D	549	559	Right-handed alpha
Helix 68	AH5	D	572	577	Right-handed alpha
Helix 69	AH6	D	577	585	Right-handed alpha
Helix 70	AH7	D	586	588	Right-handed 310
Helix 71	AH8	D	615	630	Right-handed alpha
Helix 72	AH9	D	642	654	Right-handed alpha
Helix 73	AI1	D	660	669	Right-handed alpha
Helix 74	AI2	D	670	672	Right-handed 310
Helix 75	AI3	D	693	703	Right-handed alpha
Helix 76	AI4	D	750	769	Right-handed alpha
Helix 77	AI5	D	770	795	Right-handed alpha

There are 18 sheets in PDB entry 30JV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	15	19	anti-parallel
Strand 3	A	562	566	anti-parallel
Strand 4	A	538	542	parallel
Strand 5	A	454	461	parallel
Strand 6	A	479	485	anti-parallel
Strand 7	A	491	497	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	72	76	anti-parallel
Strand 3	A	83	86	anti-parallel
Strand 4	A	115	118	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	61	first strand
Strand 2	A	64	68	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	204	207	anti-parallel
Strand 3	A	190	192	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	C	733	738	anti-parallel
Strand 3	C	720	728	anti-parallel
Strand 4	C	711	717	anti-parallel
Strand 5	C	673	678	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	476	first strand
Strand 2	A	464	467	anti-parallel
Strand 3	A	612	615	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	15	19	anti-parallel
Strand 3	B	562	566	anti-parallel
Strand 4	B	538	542	parallel
Strand 5	B	454	461	parallel
Strand 6	B	479	485	anti-parallel
Strand 7	B	491	497	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	72	76	anti-parallel
Strand 3	B	83	86	anti-parallel
Strand 4	B	115	118	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	61	first strand
Strand 2	B	64	68	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	B	204	207	anti-parallel
Strand 3	B	190	192	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	D	733	738	anti-parallel
Strand 3	D	720	728	anti-parallel
Strand 4	D	711	717	anti-parallel
Strand 5	D	673	678	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	476	first strand
Strand 2	B	464	467	anti-parallel
Strand 3	B	612	615	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	497	first strand
Strand 2	C	479	485	anti-parallel
Strand 3	C	454	461	anti-parallel
Strand 4	C	538	542	parallel
Strand 5	C	562	566	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	474	476	first strand
Strand 2	C	464	467	anti-parallel
Strand 3	C	612	614	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	684	686	first strand
Strand 2	C	689	691	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	491	497	first strand
Strand 2	D	479	485	anti-parallel
Strand 3	D	454	461	anti-parallel
Strand 4	D	538	542	parallel
Strand 5	D	562	566	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	474	476	first strand
Strand 2	D	464	467	anti-parallel
Strand 3	D	612	614	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	684	686	first strand
Strand 2	D	689	691	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 30JV

Analysis of interatomic Contacts of Structural Units in PDB entry:
30JV