Analysis of interatomic Contacts of Structural Units in PDB entry:
30OD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 30OD entry

There are 6 chains in PDB entry 30OD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 223
B
 MET 1GLY 223
C
 MET 1GLY 223
D
 MET 1GLY 223
E
 MET 1GLY 223
F
 MET 1GLY 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 30OD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 31Right-handed alpha
Helix 2
AA2
A
36 44Right-handed alpha
Helix 3
AA3
A
49 59Right-handed alpha
Helix 4
AA4
A
63 83Right-handed alpha
Helix 5
AA5
A
103 107Right-handed alpha
Helix 6
AA6
A
111 121Right-handed alpha
Helix 7
AA7
A
126 131Right-handed alpha
Helix 8
AA8
A
131 145Right-handed alpha
Helix 9
AA9
A
150 154Right-handed 310
Helix 10
AB1
A
161 176Right-handed alpha
Helix 11
AB2
A
179 194Right-handed alpha
Helix 12
AB3
A
196 205Right-handed alpha
Helix 13
AB4
A
211 219Right-handed alpha
Helix 14
AB5
B
17 31Right-handed alpha
Helix 15
AB6
B
36 43Right-handed alpha
Helix 16
AB7
B
49 60Right-handed alpha
Helix 17
AB8
B
63 84Right-handed alpha
Helix 18
AB9
B
103 107Right-handed alpha
Helix 19
AC1
B
111 121Right-handed alpha
Helix 20
AC2
B
126 145Right-handed alpha
Helix 21
AC3
B
150 154Right-handed 310
Helix 22
AC4
B
161 176Right-handed alpha
Helix 23
AC5
B
179 189Right-handed alpha
Helix 24
AC6
B
189 194Right-handed alpha
Helix 25
AC7
B
196 207Right-handed alpha
Helix 26
AC8
B
211 219Right-handed alpha
Helix 27
AC9
C
17 31Right-handed alpha
Helix 28
AD1
C
36 44Right-handed alpha
Helix 29
AD2
C
49 60Right-handed alpha
Helix 30
AD3
C
63 84Right-handed alpha
Helix 31
AD4
C
102 107Right-handed 310
Helix 32
AD5
C
111 121Right-handed alpha
Helix 33
AD6
C
126 146Right-handed alpha
Helix 34
AD7
C
150 154Right-handed 310
Helix 35
AD8
C
161 176Right-handed alpha
Helix 36
AD9
C
179 189Right-handed alpha
Helix 37
AE1
C
189 194Right-handed alpha
Helix 38
AE2
C
196 204Right-handed alpha
Helix 39
AE3
C
205 207Right-handed 310
Helix 40
AE4
C
211 219Right-handed alpha
Helix 41
AE5
D
19 31Right-handed alpha
Helix 42
AE6
D
36 44Right-handed alpha
Helix 43
AE7
D
49 60Right-handed alpha
Helix 44
AE8
D
63 82Right-handed alpha
Helix 45
AE9
D
103 107Right-handed alpha
Helix 46
AF1
D
111 120Right-handed alpha
Helix 47
AF2
D
126 131Right-handed alpha
Helix 48
AF3
D
131 145Right-handed alpha
Helix 49
AF4
D
150 154Right-handed 310
Helix 50
AF5
D
161 176Right-handed alpha
Helix 51
AF6
D
179 194Right-handed alpha
Helix 52
AF7
D
196 198Right-handed 310
Helix 53
AF8
D
199 205Right-handed alpha
Helix 54
AF9
D
211 219Right-handed alpha
Helix 55
AG1
E
17 32Right-handed alpha
Helix 56
AG2
E
38 43Right-handed alpha
Helix 57
AG3
E
49 58Right-handed alpha
Helix 58
AG4
E
63 82Right-handed alpha
Helix 59
AG5
E
83 84Right-handed 310
Helix 60
AG6
E
102 107Right-handed 310
Helix 61
AG7
E
111 121Right-handed alpha
Helix 62
AG8
E
126 146Right-handed alpha
Helix 63
AG9
E
150 154Right-handed 310
Helix 64
AH1
E
161 176Right-handed alpha
Helix 65
AH2
E
179 194Right-handed alpha
Helix 66
AH3
E
196 205Right-handed alpha
Helix 67
AH4
E
211 219Right-handed alpha
Helix 68
AH5
F
17 32Right-handed alpha
Helix 69
AH6
F
36 45Right-handed alpha
Helix 70
AH7
F
49 59Right-handed alpha
Helix 71
AH8
F
63 84Right-handed alpha
Helix 72
AH9
F
103 107Right-handed alpha
Helix 73
AI1
F
111 120Right-handed alpha
Helix 74
AI2
F
126 145Right-handed alpha
Helix 75
AI3
F
150 154Right-handed 310
Helix 76
AI4
F
161 176Right-handed alpha
Helix 77
AI5
F
179 194Right-handed alpha
Helix 78
AI6
F
196 207Right-handed alpha
Helix 79
AI7
F
211 219Right-handed alpha
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There are 6 sheets in PDB entry 30OD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
11 13anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
11 13anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
11 13anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
11 13anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 5first strand
Strand 2
E
11 13anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 5first strand
Strand 2
F
11 13anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il