Analysis of interatomic Contacts of Structural Units in PDB entry:
30SH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 30SH entry

There is 1 chain in PDB entry 30SH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 46LYS 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 30SH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 66Right-handed alpha
Helix 2
AA2
A
67 74Right-handed alpha
Helix 3
AA3
A
84 94Right-handed alpha
Helix 4
AA4
A
104 113Right-handed alpha
Helix 5
AA5
A
142 147Right-handed 310
Helix 6
AA6
A
157 170Right-handed alpha
Helix 7
AA7
A
173 177Right-handed 310
Helix 8
AA8
A
183 194Right-handed alpha
Helix 9
AA9
A
204 211Right-handed alpha
Helix 10
AB1
A
219 224Right-handed alpha
Helix 11
AB2
A
237 243Right-handed alpha
Helix 12
AB3
A
243 264Right-handed alpha
Helix 13
AB4
A
265 268Right-handed 310
Helix 14
AB5
A
272 283Right-handed alpha
Helix 15
AB6
A
288 296Right-handed alpha
Helix 16
AB7
A
300 306Right-handed alpha
Helix 17
AB8
A
312 315Right-handed 310
Helix 18
AB9
A
316 332Right-handed alpha
Helix 19
AC1
A
341 346Right-handed 310
Helix 20
AC2
A
348 355Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 30SH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 82first strand
Strand 2
A
48 54parallel
Strand 3
A
99 103parallel
Strand 4
A
230 236anti-parallel
Strand 5
A
117 125anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 181first strand
Strand 2
A
150 153parallel
Strand 3
A
198 202parallel
Strand 4
A
130 135anti-parallel
Strand 5
A
213 218anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il