Analysis of interatomic Contacts of Structural Units in PDB entry:
30SM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 30SM entry

There are 2 chains in PDB entry 30SM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3TYR 372
B
 GLU 3TYR 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 30SM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 26Right-handed alpha
Helix 2
AA2
A
36 45Right-handed alpha
Helix 3
AA3
A
57 60Right-handed 310
Helix 4
AA4
A
65 75Right-handed alpha
Helix 5
AA5
A
88 99Right-handed alpha
Helix 6
AA6
A
105 111Right-handed alpha
Helix 7
AA7
A
132 136Right-handed 310
Helix 8
AA8
A
144 147Right-handed 310
Helix 9
AA9
A
155 158Right-handed 310
Helix 10
AB1
A
165 170Right-handed 310
Helix 11
AB2
A
173 194Right-handed alpha
Helix 12
AB3
A
198 223Right-handed alpha
Helix 13
AB4
A
224 229Right-handed 310
Helix 14
AB5
A
230 249Right-handed alpha
Helix 15
AB6
A
251 265Right-handed alpha
Helix 16
AB7
A
267 287Right-handed alpha
Helix 17
AB8
A
290 304Right-handed alpha
Helix 18
AB9
A
306 308Right-handed 310
Helix 19
AC1
A
309 322Right-handed alpha
Helix 20
AC2
A
326 331Right-handed 310
Helix 21
AC3
A
333 348Right-handed alpha
Helix 22
AC4
A
348 353Right-handed alpha
Helix 23
AC5
A
360 372Right-handed alpha
Helix 24
AC6
B
17 26Right-handed alpha
Helix 25
AC7
B
36 45Right-handed alpha
Helix 26
AC8
B
46 48Right-handed 310
Helix 27
AC9
B
57 60Right-handed 310
Helix 28
AD1
B
65 75Right-handed alpha
Helix 29
AD2
B
88 99Right-handed alpha
Helix 30
AD3
B
105 111Right-handed alpha
Helix 31
AD4
B
132 136Right-handed 310
Helix 32
AD5
B
144 147Right-handed 310
Helix 33
AD6
B
155 158Right-handed 310
Helix 34
AD7
B
165 172Right-handed 310
Helix 35
AD8
B
173 194Right-handed alpha
Helix 36
AD9
B
198 223Right-handed alpha
Helix 37
AE1
B
224 229Right-handed 310
Helix 38
AE2
B
230 249Right-handed alpha
Helix 39
AE3
B
251 265Right-handed alpha
Helix 40
AE4
B
267 287Right-handed alpha
Helix 41
AE5
B
290 304Right-handed alpha
Helix 42
AE6
B
306 308Right-handed 310
Helix 43
AE7
B
309 322Right-handed alpha
Helix 44
AE8
B
326 331Right-handed 310
Helix 45
AE9
B
333 348Right-handed alpha
Helix 46
AF1
B
348 353Right-handed alpha
Helix 47
AF2
B
360 372Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 30SM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
31 35parallel
Strand 3
A
82 87parallel
Strand 4
A
121 126parallel
Strand 5
A
161 164parallel
Strand 6
A
4 14parallel
Strand 7
B
4 14anti-parallel
Strand 8
B
161 164parallel
Strand 9
B
121 126parallel
Strand 10
B
82 87parallel
Strand 11
B
31 35parallel
Strand 12
B
52 55parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 143first strand
Strand 2
A
148 153anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 143first strand
Strand 2
B
148 153anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il