Analysis of interatomic Contacts of Structural Units in PDB entry:
30XJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 30XJ entry

There are 5 chains in PDB entry 30XJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 29	PRO 665
E	UNK 1	UNK 4
B	GLU 29	PRO 665
U	UNK 1	UNK 4
C	GLU 29	GLU 32

There are 96 helices in PDB entry 30XJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	34	Right-handed 310
Helix 2	AA2	A	35	47	Right-handed alpha
Helix 3	AA3	A	54	70	Right-handed alpha
Helix 4	AA4	A	77	89	Right-handed alpha
Helix 5	AA5	A	90	97	Right-handed alpha
Helix 6	AA6	A	100	125	Right-handed alpha
Helix 7	AA7	A	149	171	Right-handed alpha
Helix 8	AA8	A	174	195	Right-handed alpha
Helix 9	AA9	A	197	214	Right-handed alpha
Helix 10	AB1	A	221	234	Right-handed alpha
Helix 11	AB2	A	259	265	Right-handed alpha
Helix 12	AB3	A	290	299	Right-handed alpha
Helix 13	AB4	A	333	336	Right-handed 310
Helix 14	AB5	A	371	386	Right-handed alpha
Helix 15	AB6	A	403	412	Right-handed alpha
Helix 16	AB7	A	457	469	Right-handed alpha
Helix 17	AB8	A	493	496	Right-handed 310
Helix 18	AB9	A	535	539	Right-handed 310
Helix 19	AC1	A	553	557	Right-handed 310
Helix 20	AC2	A	569	587	Right-handed alpha
Helix 21	AC3	A	587	604	Right-handed alpha
Helix 22	AC4	A	609	629	Right-handed alpha
Helix 23	AC5	A	630	641	Right-handed alpha
Helix 24	AC6	A	641	659	Right-handed alpha
Helix 25	AC7	B	32	34	Right-handed 310
Helix 26	AC8	B	35	47	Right-handed alpha
Helix 27	AC9	B	54	70	Right-handed alpha
Helix 28	AD1	B	77	89	Right-handed alpha
Helix 29	AD2	B	90	97	Right-handed alpha
Helix 30	AD3	B	100	125	Right-handed alpha
Helix 31	AD4	B	149	170	Right-handed alpha
Helix 32	AD5	B	174	195	Right-handed alpha
Helix 33	AD6	B	197	214	Right-handed alpha
Helix 34	AD7	B	221	234	Right-handed alpha
Helix 35	AD8	B	259	265	Right-handed alpha
Helix 36	AD9	B	290	299	Right-handed alpha
Helix 37	AE1	B	333	336	Right-handed 310
Helix 38	AE2	B	371	386	Right-handed alpha
Helix 39	AE3	B	402	412	Right-handed alpha
Helix 40	AE4	B	457	469	Right-handed alpha
Helix 41	AE5	B	493	496	Right-handed 310
Helix 42	AE6	B	535	539	Right-handed 310
Helix 43	AE7	B	553	557	Right-handed 310
Helix 44	AE8	B	569	587	Right-handed alpha
Helix 45	AE9	B	587	604	Right-handed alpha
Helix 46	AF1	B	609	628	Right-handed alpha
Helix 47	AF2	B	630	639	Right-handed alpha
Helix 48	AF3	B	641	659	Right-handed alpha
Helix 49	AF4	C	32	34	Right-handed 310
Helix 50	AF5	C	35	47	Right-handed alpha
Helix 51	AF6	C	54	70	Right-handed alpha
Helix 52	AF7	C	77	89	Right-handed alpha
Helix 53	AF8	C	90	97	Right-handed alpha
Helix 54	AF9	C	100	125	Right-handed alpha
Helix 55	AG1	C	149	170	Right-handed alpha
Helix 56	AG2	C	174	195	Right-handed alpha
Helix 57	AG3	C	197	214	Right-handed alpha
Helix 58	AG4	C	221	234	Right-handed alpha
Helix 59	AG5	C	259	265	Right-handed alpha
Helix 60	AG6	C	290	299	Right-handed alpha
Helix 61	AG7	C	333	336	Right-handed 310
Helix 62	AG8	C	371	386	Right-handed alpha
Helix 63	AG9	C	403	412	Right-handed alpha
Helix 64	AH1	C	457	469	Right-handed alpha
Helix 65	AH2	C	493	496	Right-handed 310
Helix 66	AH3	C	535	539	Right-handed 310
Helix 67	AH4	C	553	557	Right-handed 310
Helix 68	AH5	C	569	586	Right-handed alpha
Helix 69	AH6	C	587	604	Right-handed alpha
Helix 70	AH7	C	609	629	Right-handed alpha
Helix 71	AH8	C	630	639	Right-handed alpha
Helix 72	AH9	C	641	659	Right-handed alpha
Helix 73	AI1	D	32	34	Right-handed 310
Helix 74	AI2	D	35	47	Right-handed alpha
Helix 75	AI3	D	54	70	Right-handed alpha
Helix 76	AI4	D	77	89	Right-handed alpha
Helix 77	AI5	D	90	97	Right-handed alpha
Helix 78	AI6	D	100	125	Right-handed alpha
Helix 79	AI7	D	149	170	Right-handed alpha
Helix 80	AI8	D	174	195	Right-handed alpha
Helix 81	AI9	D	197	214	Right-handed alpha
Helix 82	AJ1	D	221	234	Right-handed alpha
Helix 83	AJ2	D	259	265	Right-handed alpha
Helix 84	AJ3	D	290	299	Right-handed alpha
Helix 85	AJ4	D	333	336	Right-handed 310
Helix 86	AJ5	D	371	386	Right-handed alpha
Helix 87	AJ6	D	402	412	Right-handed alpha
Helix 88	AJ7	D	457	469	Right-handed alpha
Helix 89	AJ8	D	493	496	Right-handed 310
Helix 90	AJ9	D	535	539	Right-handed 310
Helix 91	AK1	D	553	557	Right-handed 310
Helix 92	AK2	D	569	586	Right-handed alpha
Helix 93	AK3	D	587	604	Right-handed alpha
Helix 94	AK4	D	609	629	Right-handed alpha
Helix 95	AK5	D	630	639	Right-handed alpha
Helix 96	AK6	D	641	659	Right-handed alpha

There are 29 sheets in PDB entry 30XJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	138	first strand
Strand 2	A	606	608	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	498	507	anti-parallel
Strand 3	A	417	423	anti-parallel
Strand 4	A	434	436	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	498	507	anti-parallel
Strand 3	A	485	491	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	328	331	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	272	278	anti-parallel
Strand 3	A	305	312	anti-parallel
Strand 4	A	319	326	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	272	278	anti-parallel
Strand 3	A	249	255	anti-parallel
Strand 4	A	241	246	anti-parallel
Strand 5	E	2	4	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	346	first strand
Strand 2	A	349	357	anti-parallel
Strand 3	A	390	394	parallel
Strand 4	A	447	450	parallel
Strand 5	A	473	476	parallel
Strand 6	A	523	524	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	M	2	3	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	138	first strand
Strand 2	B	606	608	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	220	first strand
Strand 2	B	498	507	anti-parallel
Strand 3	B	417	423	anti-parallel
Strand 4	B	434	436	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	220	first strand
Strand 2	B	498	507	anti-parallel
Strand 3	B	485	491	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	238	first strand
Strand 2	B	328	331	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	272	277	anti-parallel
Strand 3	B	305	312	anti-parallel
Strand 4	B	319	326	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	272	277	anti-parallel
Strand 3	B	249	255	anti-parallel
Strand 4	B	241	246	anti-parallel
Strand 5	U	2	4	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	346	first strand
Strand 2	B	349	357	anti-parallel
Strand 3	B	390	394	parallel
Strand 4	B	447	450	parallel
Strand 5	B	473	476	parallel
Strand 6	B	523	524	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	138	first strand
Strand 2	C	606	608	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	220	first strand
Strand 2	C	498	507	anti-parallel
Strand 3	C	485	491	anti-parallel
Strand 4	L	2	4	anti-parallel
Strand 5	C	401	402	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	220	first strand
Strand 2	C	498	507	anti-parallel
Strand 3	C	417	422	anti-parallel
Strand 4	C	432	436	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	238	first strand
Strand 2	C	328	331	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	272	277	anti-parallel
Strand 3	C	305	312	anti-parallel
Strand 4	C	319	326	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	272	277	anti-parallel
Strand 3	C	249	255	anti-parallel
Strand 4	C	241	246	anti-parallel
Strand 5	F	2	4	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	346	first strand
Strand 2	C	349	357	anti-parallel
Strand 3	C	390	394	parallel
Strand 4	C	447	450	parallel
Strand 5	C	473	476	parallel
Strand 6	C	523	524	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	D	241	246	anti-parallel
Strand 3	D	249	255	anti-parallel
Strand 4	D	272	278	anti-parallel
Strand 5	D	283	285	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	D	241	246	anti-parallel
Strand 3	D	249	255	anti-parallel
Strand 4	D	272	278	anti-parallel
Strand 5	D	305	312	anti-parallel
Strand 6	D	319	326	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	2	3	first strand
Strand 2	D	485	491	anti-parallel
Strand 3	D	498	507	anti-parallel
Strand 4	D	218	220	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	2	3	first strand
Strand 2	D	485	491	anti-parallel
Strand 3	D	498	507	anti-parallel
Strand 4	D	417	423	anti-parallel
Strand 5	D	432	436	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	138	first strand
Strand 2	D	606	608	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	238	first strand
Strand 2	D	328	331	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	346	first strand
Strand 2	D	349	357	anti-parallel
Strand 3	D	390	394	parallel
Strand 4	D	447	450	parallel
Strand 5	D	473	476	parallel
Strand 6	D	523	524	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 30XJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
30XJ