Analysis of interatomic Contacts of Structural Units in PDB entry:
30YS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 30YS entry

There are 7 chains in PDB entry 30YS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 116	PRO 404
F	MET 116	GLN 410
G	MET 116	VAL 409
H	MET 116	GLN 410
I	MET 116	VAL 409
J	MET 116	GLN 410
K	MET 116	GLN 410

There are 63 helices in PDB entry 30YS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	127	132	Right-handed 310
Helix 2	AA2	A	149	154	Right-handed 310
Helix 3	AA3	A	213	219	Right-handed alpha
Helix 4	AA4	A	222	249	Right-handed alpha
Helix 5	AA5	A	258	269	Right-handed alpha
Helix 6	AA6	A	271	278	Right-handed alpha
Helix 7	AA7	A	284	292	Right-handed alpha
Helix 8	AA8	A	344	348	Right-handed alpha
Helix 9	AA9	A	368	371	Right-handed 310
Helix 10	AB1	A	388	390	Right-handed 310
Helix 11	AB2	F	127	132	Right-handed 310
Helix 12	AB3	F	213	219	Right-handed alpha
Helix 13	AB4	F	222	249	Right-handed alpha
Helix 14	AB5	F	259	269	Right-handed alpha
Helix 15	AB6	F	271	276	Right-handed alpha
Helix 16	AB7	F	284	291	Right-handed alpha
Helix 17	AB8	F	344	348	Right-handed alpha
Helix 18	AB9	F	388	390	Right-handed 310
Helix 19	AC1	G	127	132	Right-handed 310
Helix 20	AC2	G	150	154	Right-handed 310
Helix 21	AC3	G	213	219	Right-handed alpha
Helix 22	AC4	G	222	248	Right-handed alpha
Helix 23	AC5	G	258	269	Right-handed alpha
Helix 24	AC6	G	271	276	Right-handed alpha
Helix 25	AC7	G	284	291	Right-handed alpha
Helix 26	AC8	G	344	348	Right-handed alpha
Helix 27	AC9	G	367	372	Right-handed alpha
Helix 28	AD1	G	388	390	Right-handed 310
Helix 29	AD2	H	127	132	Right-handed 310
Helix 30	AD3	H	213	219	Right-handed alpha
Helix 31	AD4	H	222	249	Right-handed alpha
Helix 32	AD5	H	258	268	Right-handed alpha
Helix 33	AD6	H	271	276	Right-handed alpha
Helix 34	AD7	H	284	291	Right-handed alpha
Helix 35	AD8	H	345	347	Right-handed 310
Helix 36	AD9	H	367	372	Right-handed alpha
Helix 37	AE1	I	127	132	Right-handed 310
Helix 38	AE2	I	213	219	Right-handed alpha
Helix 39	AE3	I	222	249	Right-handed alpha
Helix 40	AE4	I	259	269	Right-handed alpha
Helix 41	AE5	I	271	276	Right-handed alpha
Helix 42	AE6	I	284	291	Right-handed alpha
Helix 43	AE7	I	344	348	Right-handed alpha
Helix 44	AE8	I	367	372	Right-handed alpha
Helix 45	AE9	I	388	390	Right-handed 310
Helix 46	AF1	J	127	132	Right-handed 310
Helix 47	AF2	J	150	154	Right-handed 310
Helix 48	AF3	J	213	219	Right-handed alpha
Helix 49	AF4	J	222	249	Right-handed alpha
Helix 50	AF5	J	258	269	Right-handed alpha
Helix 51	AF6	J	271	276	Right-handed alpha
Helix 52	AF7	J	284	291	Right-handed alpha
Helix 53	AF8	J	345	347	Right-handed 310
Helix 54	AF9	J	388	390	Right-handed 310
Helix 55	AG1	K	127	132	Right-handed 310
Helix 56	AG2	K	149	154	Right-handed 310
Helix 57	AG3	K	213	219	Right-handed alpha
Helix 58	AG4	K	222	249	Right-handed alpha
Helix 59	AG5	K	258	269	Right-handed alpha
Helix 60	AG6	K	271	276	Right-handed alpha
Helix 61	AG7	K	284	291	Right-handed alpha
Helix 62	AG8	K	345	347	Right-handed 310
Helix 63	AG9	K	367	372	Right-handed alpha

There are 32 sheets in PDB entry 30YS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	158	first strand
Strand 2	A	349	362	parallel
Strand 3	A	373	386	anti-parallel
Strand 4	A	203	212	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	169	first strand
Strand 2	A	195	201	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	279	283	parallel
Strand 4	A	336	343	anti-parallel
Strand 5	A	330	331	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	279	283	parallel
Strand 4	A	336	343	anti-parallel
Strand 5	A	392	397	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	141	first strand
Strand 2	I	163	170	parallel
Strand 3	I	194	201	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	159	first strand
Strand 2	F	349	354	parallel
Strand 3	F	373	386	anti-parallel
Strand 4	F	358	362	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	159	first strand
Strand 2	F	349	354	parallel
Strand 3	F	373	386	anti-parallel
Strand 4	F	203	212	anti-parallel
Strand 5	I	178	179	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	194	201	first strand
Strand 2	F	163	170	anti-parallel
Strand 3	K	135	141	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	313	314	first strand
Strand 2	F	317	322	anti-parallel
Strand 3	F	279	283	parallel
Strand 4	F	336	343	anti-parallel
Strand 5	F	330	331	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	313	314	first strand
Strand 2	F	317	322	anti-parallel
Strand 3	F	279	283	parallel
Strand 4	F	336	343	anti-parallel
Strand 5	F	392	397	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	408	first strand
Strand 2	K	405	409	parallel
Strand 3	G	406	408	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	141	first strand
Strand 2	K	163	170	parallel
Strand 3	K	194	201	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	159	first strand
Strand 2	G	349	362	parallel
Strand 3	G	373	386	anti-parallel
Strand 4	G	203	212	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	201	first strand
Strand 2	G	163	170	anti-parallel
Strand 3	J	135	141	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	319	322	first strand
Strand 2	G	279	283	parallel
Strand 3	G	336	343	anti-parallel
Strand 4	G	330	331	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	319	322	first strand
Strand 2	G	279	283	parallel
Strand 3	G	336	343	anti-parallel
Strand 4	G	392	397	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	141	first strand
Strand 2	J	163	170	parallel
Strand 3	J	194	201	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	158	first strand
Strand 2	H	349	362	parallel
Strand 3	H	373	386	anti-parallel
Strand 4	H	203	212	anti-parallel
Strand 5	J	178	179	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	194	201	first strand
Strand 2	H	163	170	anti-parallel
Strand 3	I	134	141	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	179	180	first strand
Strand 2	I	203	212	anti-parallel
Strand 3	I	373	386	anti-parallel
Strand 4	I	349	353	anti-parallel
Strand 5	I	155	158	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	179	180	first strand
Strand 2	I	203	212	anti-parallel
Strand 3	I	373	386	anti-parallel
Strand 4	I	358	362	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	313	314	first strand
Strand 2	H	317	322	anti-parallel
Strand 3	H	279	283	parallel
Strand 4	H	336	343	anti-parallel
Strand 5	H	330	331	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	313	314	first strand
Strand 2	H	317	322	anti-parallel
Strand 3	H	279	283	parallel
Strand 4	H	336	343	anti-parallel
Strand 5	H	392	397	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	406	408	first strand
Strand 2	H	405	409	parallel
Strand 3	J	407	409	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	319	322	first strand
Strand 2	I	279	283	parallel
Strand 3	I	336	343	anti-parallel
Strand 4	I	330	331	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	319	322	first strand
Strand 2	I	279	283	parallel
Strand 3	I	336	343	anti-parallel
Strand 4	I	392	397	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	158	first strand
Strand 2	J	349	362	parallel
Strand 3	J	373	386	anti-parallel
Strand 4	J	203	212	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	319	322	first strand
Strand 2	J	279	283	parallel
Strand 3	J	336	343	anti-parallel
Strand 4	J	330	331	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	319	322	first strand
Strand 2	J	279	283	parallel
Strand 3	J	336	343	anti-parallel
Strand 4	J	392	397	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	155	158	first strand
Strand 2	K	349	362	parallel
Strand 3	K	373	386	anti-parallel
Strand 4	K	203	212	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	313	314	first strand
Strand 2	K	317	322	anti-parallel
Strand 3	K	279	283	parallel
Strand 4	K	336	343	anti-parallel
Strand 5	K	330	331	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	313	314	first strand
Strand 2	K	317	322	anti-parallel
Strand 3	K	279	283	parallel
Strand 4	K	336	343	anti-parallel
Strand 5	K	392	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 30YS

Analysis of interatomic Contacts of Structural Units in PDB entry:
30YS