Analysis of interatomic Contacts of Structural Units in PDB entry:
30YY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 30YY entry

There are 6 chains in PDB entry 30YY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	MET 1	VAL 659
A	MET 1	VAL 659
B	MET 1	VAL 659
C	MET 1	VAL 659
D	MET 1	VAL 659
E	MET 1	VAL 659

There are 24 helices in PDB entry 30YY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	66	68	Right-handed 310
Helix 2	AA2	F	69	82	Right-handed alpha
Helix 3	AA3	F	599	603	Right-handed 310
Helix 4	AA4	F	618	621	Right-handed 310
Helix 5	AA5	A	66	68	Right-handed 310
Helix 6	AA6	A	69	82	Right-handed alpha
Helix 7	AA7	A	599	603	Right-handed 310
Helix 8	AA8	A	618	621	Right-handed 310
Helix 9	AA9	B	66	68	Right-handed 310
Helix 10	AB1	B	69	82	Right-handed alpha
Helix 11	AB2	B	599	603	Right-handed 310
Helix 12	AB3	B	618	621	Right-handed 310
Helix 13	AB4	C	66	68	Right-handed 310
Helix 14	AB5	C	69	82	Right-handed alpha
Helix 15	AB6	C	599	603	Right-handed 310
Helix 16	AB7	C	618	621	Right-handed 310
Helix 17	AB8	D	66	68	Right-handed 310
Helix 18	AB9	D	69	82	Right-handed alpha
Helix 19	AC1	D	599	603	Right-handed 310
Helix 20	AC2	D	618	621	Right-handed 310
Helix 21	AC3	E	66	68	Right-handed 310
Helix 22	AC4	E	69	82	Right-handed alpha
Helix 23	AC5	E	599	603	Right-handed 310
Helix 24	AC6	E	618	621	Right-handed 310

There are 30 sheets in PDB entry 30YY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	2	5	anti-parallel
Strand 3	F	86	92	anti-parallel
Strand 4	F	95	106	anti-parallel
Strand 5	F	122	130	anti-parallel
Strand 6	F	57	63	anti-parallel
Strand 7	F	19	25	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	2	5	anti-parallel
Strand 3	F	86	92	anti-parallel
Strand 4	F	95	106	anti-parallel
Strand 5	B	29	38	anti-parallel
Strand 6	B	41	49	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	49	first strand
Strand 2	F	29	38	anti-parallel
Strand 3	D	95	106	anti-parallel
Strand 4	D	86	92	anti-parallel
Strand 5	D	2	5	anti-parallel
Strand 6	D	11	13	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	49	first strand
Strand 2	F	29	38	anti-parallel
Strand 3	D	95	106	anti-parallel
Strand 4	D	122	130	anti-parallel
Strand 5	D	57	63	anti-parallel
Strand 6	D	19	25	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	141	first strand
Strand 2	F	648	656	anti-parallel
Strand 3	F	553	560	anti-parallel
Strand 4	F	593	597	anti-parallel
Strand 5	F	604	608	anti-parallel
Strand 6	F	614	616	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	141	first strand
Strand 2	F	648	656	anti-parallel
Strand 3	F	553	560	anti-parallel
Strand 4	F	630	632	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	537	543	first strand
Strand 2	F	634	641	anti-parallel
Strand 3	F	568	574	anti-parallel
Strand 4	F	577	584	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	2	5	anti-parallel
Strand 3	A	86	92	anti-parallel
Strand 4	A	95	106	anti-parallel
Strand 5	A	122	130	anti-parallel
Strand 6	A	57	63	anti-parallel
Strand 7	A	19	25	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	2	5	anti-parallel
Strand 3	A	86	92	anti-parallel
Strand 4	A	95	106	anti-parallel
Strand 5	C	29	38	anti-parallel
Strand 6	C	41	49	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	49	first strand
Strand 2	A	29	38	anti-parallel
Strand 3	B	95	106	anti-parallel
Strand 4	B	86	92	anti-parallel
Strand 5	B	2	5	anti-parallel
Strand 6	B	11	13	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	49	first strand
Strand 2	A	29	38	anti-parallel
Strand 3	B	95	106	anti-parallel
Strand 4	B	122	130	anti-parallel
Strand 5	B	57	63	anti-parallel
Strand 6	B	19	25	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	141	first strand
Strand 2	A	648	656	anti-parallel
Strand 3	A	553	560	anti-parallel
Strand 4	A	593	597	anti-parallel
Strand 5	A	604	608	anti-parallel
Strand 6	A	614	616	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	141	first strand
Strand 2	A	648	656	anti-parallel
Strand 3	A	553	560	anti-parallel
Strand 4	A	630	632	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	543	first strand
Strand 2	A	634	641	anti-parallel
Strand 3	A	568	574	anti-parallel
Strand 4	A	577	584	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	141	first strand
Strand 2	B	648	656	anti-parallel
Strand 3	B	553	560	anti-parallel
Strand 4	B	593	597	anti-parallel
Strand 5	B	604	608	anti-parallel
Strand 6	B	614	616	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	141	first strand
Strand 2	B	648	656	anti-parallel
Strand 3	B	553	560	anti-parallel
Strand 4	B	630	632	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	543	first strand
Strand 2	B	634	641	anti-parallel
Strand 3	B	568	574	anti-parallel
Strand 4	B	577	584	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	2	5	anti-parallel
Strand 3	C	86	92	anti-parallel
Strand 4	C	95	106	anti-parallel
Strand 5	C	122	130	anti-parallel
Strand 6	C	57	63	anti-parallel
Strand 7	C	19	25	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	2	5	anti-parallel
Strand 3	C	86	92	anti-parallel
Strand 4	C	95	106	anti-parallel
Strand 5	E	29	38	anti-parallel
Strand 6	E	41	49	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	141	first strand
Strand 2	C	647	656	anti-parallel
Strand 3	C	553	561	anti-parallel
Strand 4	C	593	597	anti-parallel
Strand 5	C	604	608	anti-parallel
Strand 6	C	614	616	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	141	first strand
Strand 2	C	647	656	anti-parallel
Strand 3	C	553	561	anti-parallel
Strand 4	C	630	632	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	537	543	first strand
Strand 2	C	634	641	anti-parallel
Strand 3	C	568	574	anti-parallel
Strand 4	C	577	584	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	49	first strand
Strand 2	D	29	38	anti-parallel
Strand 3	E	95	106	anti-parallel
Strand 4	E	86	92	anti-parallel
Strand 5	E	2	5	anti-parallel
Strand 6	E	11	13	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	49	first strand
Strand 2	D	29	38	anti-parallel
Strand 3	E	95	106	anti-parallel
Strand 4	E	122	130	anti-parallel
Strand 5	E	57	63	anti-parallel
Strand 6	E	19	25	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	141	first strand
Strand 2	D	647	656	anti-parallel
Strand 3	D	553	561	anti-parallel
Strand 4	D	593	597	anti-parallel
Strand 5	D	604	608	anti-parallel
Strand 6	D	614	616	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	141	first strand
Strand 2	D	647	656	anti-parallel
Strand 3	D	553	561	anti-parallel
Strand 4	D	630	632	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	537	543	first strand
Strand 2	D	634	641	anti-parallel
Strand 3	D	568	574	anti-parallel
Strand 4	D	577	584	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	141	first strand
Strand 2	E	648	656	anti-parallel
Strand 3	E	553	561	anti-parallel
Strand 4	E	593	597	anti-parallel
Strand 5	E	604	608	anti-parallel
Strand 6	E	614	616	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	141	first strand
Strand 2	E	648	656	anti-parallel
Strand 3	E	553	561	anti-parallel
Strand 4	E	630	632	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	537	543	first strand
Strand 2	E	634	641	anti-parallel
Strand 3	E	568	574	anti-parallel
Strand 4	E	577	584	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 30YY

Analysis of interatomic Contacts of Structural Units in PDB entry:
30YY