Analysis of interatomic Contacts of Structural Units in PDB entry:
30YZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 30YZ entry

There are 4 chains in PDB entry 30YZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
U	MET 1	VAL 659
W	ALA 2	GLY 261
A	ALA 2	GLY 261
B	ALA 2	GLY 261

There are 11 helices in PDB entry 30YZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	U	69	81	Right-handed alpha
Helix 2	AA2	U	599	603	Right-handed 310
Helix 3	AA3	U	618	621	Right-handed 310
Helix 4	AA4	W	14	26	Right-handed alpha
Helix 5	AA5	W	122	126	Right-handed 310
Helix 6	AA6	W	206	210	Right-handed 310
Helix 7	AA7	A	14	26	Right-handed alpha
Helix 8	AA8	A	206	210	Right-handed 310
Helix 9	AA9	B	14	26	Right-handed alpha
Helix 10	AB1	B	122	126	Right-handed 310
Helix 11	AB2	B	206	210	Right-handed 310

There are 24 sheets in PDB entry 30YZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	11	13	first strand
Strand 2	U	3	5	anti-parallel
Strand 3	U	86	92	anti-parallel
Strand 4	U	95	106	anti-parallel
Strand 5	U	122	130	anti-parallel
Strand 6	U	57	63	anti-parallel
Strand 7	U	19	25	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	31	38	first strand
Strand 2	U	41	49	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	134	141	first strand
Strand 2	U	647	656	anti-parallel
Strand 3	U	557	561	anti-parallel
Strand 4	U	593	597	anti-parallel
Strand 5	U	604	608	anti-parallel
Strand 6	U	614	616	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	521	522	first strand
Strand 2	B	12	13	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	525	526	first strand
Strand 2	A	12	13	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	537	542	first strand
Strand 2	U	635	641	anti-parallel
Strand 3	U	568	574	anti-parallel
Strand 4	U	577	584	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	553	555	first strand
Strand 2	U	630	632	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	3	5	first strand
Strand 2	B	61	65	anti-parallel
Strand 3	B	54	58	anti-parallel
Strand 4	B	31	32	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	31	32	first strand
Strand 2	W	54	58	anti-parallel
Strand 3	W	61	65	anti-parallel
Strand 4	A	3	5	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	42	45	first strand
Strand 2	W	48	51	anti-parallel
Strand 3	W	69	72	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	109	114	first strand
Strand 2	W	77	86	anti-parallel
Strand 3	W	129	139	anti-parallel
Strand 4	W	144	148	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	159	160	first strand
Strand 2	W	176	179	anti-parallel
Strand 3	W	183	189	anti-parallel
Strand 4	W	253	259	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	201	204	first strand
Strand 2	W	239	241	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	54	58	anti-parallel
Strand 3	A	61	65	anti-parallel
Strand 4	B	3	5	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	48	51	anti-parallel
Strand 3	A	69	72	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	82	first strand
Strand 2	A	133	139	anti-parallel
Strand 3	A	144	148	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	129	130	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	103	105	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	169	180	anti-parallel
Strand 3	A	183	191	anti-parallel
Strand 4	A	254	259	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	251	252	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	48	51	anti-parallel
Strand 3	B	69	72	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	78	86	anti-parallel
Strand 3	B	129	139	anti-parallel
Strand 4	B	144	148	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	176	180	anti-parallel
Strand 3	B	183	191	anti-parallel
Strand 4	B	252	259	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	242	243	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 30YZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
30YZ