Analysis of interatomic Contacts of Structural Units in PDB entry:
32UM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 32UM entry

There are 2 chains in PDB entry 32UM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 331VAL 1346
G
 U 2 U 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 32UM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
332 336Right-handed 310
Helix 2
AA2
A
341 346Right-handed alpha
Helix 3
AA3
A
364 393Right-handed alpha
Helix 4
AA4
A
399 403Right-handed 310
Helix 5
AA5
A
434 438Right-handed 310
Helix 6
AA6
A
473 479Right-handed alpha
Helix 7
AA7
A
492 496Right-handed 310
Helix 8
AA8
A
512 523Right-handed alpha
Helix 9
AA9
A
524 525Right-handed 310
Helix 10
AB1
A
526 530Right-handed 310
Helix 11
AB2
A
532 537Right-handed alpha
Helix 12
AB3
A
548 553Right-handed alpha
Helix 13
AB4
A
586 590Right-handed 310
Helix 14
AB5
A
592 597Right-handed alpha
Helix 15
AB6
A
599 612Right-handed alpha
Helix 16
AB7
A
624 639Right-handed alpha
Helix 17
AB8
A
639 644Right-handed alpha
Helix 18
AB9
A
658 673Right-handed alpha
Helix 19
AC1
A
689 692Right-handed 310
Helix 20
AC2
A
693 698Right-handed alpha
Helix 21
AC3
A
702 706Right-handed 310
Helix 22
AC4
A
710 739Right-handed alpha
Helix 23
AC5
A
942 958Right-handed alpha
Helix 24
AC6
A
961 966Right-handed alpha
Helix 25
AC7
A
967 976Right-handed alpha
Helix 26
AC8
A
985 991Right-handed alpha
Helix 27
AC9
A
991 999Right-handed alpha
Helix 28
AD1
A
1007 1011Right-handed 310
Helix 29
AD2
A
1012 1018Right-handed alpha
Helix 30
AD3
A
1042 1049Right-handed alpha
Helix 31
AD4
A
1054 1062Right-handed alpha
Helix 32
AD5
A
1076 1084Right-handed alpha
Helix 33
AD6
A
1095 1099Right-handed 310
Helix 34
AD7
A
1130 1147Right-handed alpha
Helix 35
AD8
A
1150 1152Right-handed 310
Helix 36
AD9
A
1160 1169Right-handed alpha
Helix 37
AE1
A
1185 1187Right-handed 310
Helix 38
AE2
A
1208 1212Right-handed 310
Helix 39
AE3
A
1213 1222Right-handed alpha
Helix 40
AE4
A
1233 1238Right-handed alpha
Helix 41
AE5
A
1240 1253Right-handed alpha
Helix 42
AE6
A
1276 1283Right-handed 310
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There are 6 sheets in PDB entry 32UM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 420first strand
Strand 2
A
427 431anti-parallel
Strand 3
A
481 486anti-parallel
Strand 4
A
465 471anti-parallel
Strand 5
A
453 457anti-parallel
Strand 6
A
503 508anti-parallel
Strand 7
A
408 420anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
677 679first strand
Strand 2
A
980 984parallel
Strand 3
A
652 656parallel
Strand 4
A
1002 1005parallel
Strand 5
A
1026 1031parallel
Strand 6
A
614 618parallel
Strand 7
A
1067 1068parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1071 1072first strand
Strand 2
A
1092 1093parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1180 1183first strand
Strand 2
A
1154 1158parallel
Strand 3
A
1192 1198parallel
Strand 4
A
1224 1232parallel
Strand 5
A
1110 1114parallel
Strand 6
A
1256 1257parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1128 1129anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1260 1263first strand
Strand 2
A
1271 1274anti-parallel
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