Analysis of interatomic Contacts of Structural Units in PDB entry:
35TW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 35TW entry

There are 9 chains in PDB entry 35TW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	VAL 195
E	MET 1	VAL 195
F	MET 1	VAL 195
G	MET 1	VAL 195
H	MET 1	VAL 195
I	MET 1	VAL 195
J	MET 1	VAL 195
B	G 2	C 22
A	U 25	A 92

There are 58 helices in PDB entry 35TW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	19	23	Right-handed 310
Helix 2	AA2	D	26	37	Right-handed alpha
Helix 3	AA3	D	42	56	Right-handed alpha
Helix 4	AA4	D	70	82	Right-handed alpha
Helix 5	AA5	D	83	85	Right-handed 310
Helix 6	AA6	D	86	93	Right-handed alpha
Helix 7	AA7	D	111	116	Right-handed alpha
Helix 8	AA8	D	118	122	Right-handed 310
Helix 9	AA9	D	158	173	Right-handed alpha
Helix 10	AB1	E	19	23	Right-handed 310
Helix 11	AB2	E	26	38	Right-handed alpha
Helix 12	AB3	E	42	56	Right-handed alpha
Helix 13	AB4	E	70	83	Right-handed alpha
Helix 14	AB5	E	86	94	Right-handed alpha
Helix 15	AB6	E	111	116	Right-handed alpha
Helix 16	AB7	E	118	120	Right-handed 310
Helix 17	AB8	E	158	173	Right-handed alpha
Helix 18	AB9	F	19	23	Right-handed 310
Helix 19	AC1	F	26	37	Right-handed alpha
Helix 20	AC2	F	42	57	Right-handed alpha
Helix 21	AC3	F	70	83	Right-handed alpha
Helix 22	AC4	F	86	93	Right-handed alpha
Helix 23	AC5	F	111	116	Right-handed alpha
Helix 24	AC6	F	117	120	Right-handed 310
Helix 25	AC7	F	158	173	Right-handed alpha
Helix 26	AC8	G	19	23	Right-handed 310
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	42	57	Right-handed alpha
Helix 29	AD2	G	70	83	Right-handed alpha
Helix 30	AD3	G	86	94	Right-handed alpha
Helix 31	AD4	G	111	116	Right-handed alpha
Helix 32	AD5	G	117	120	Right-handed 310
Helix 33	AD6	G	158	173	Right-handed alpha
Helix 34	AD7	H	19	23	Right-handed 310
Helix 35	AD8	H	26	37	Right-handed alpha
Helix 36	AD9	H	42	57	Right-handed alpha
Helix 37	AE1	H	70	83	Right-handed alpha
Helix 38	AE2	H	86	93	Right-handed alpha
Helix 39	AE3	H	111	116	Right-handed alpha
Helix 40	AE4	H	117	120	Right-handed 310
Helix 41	AE5	H	158	173	Right-handed alpha
Helix 42	AE6	I	19	23	Right-handed 310
Helix 43	AE7	I	26	37	Right-handed alpha
Helix 44	AE8	I	42	57	Right-handed alpha
Helix 45	AE9	I	70	82	Right-handed alpha
Helix 46	AF1	I	83	85	Right-handed 310
Helix 47	AF2	I	89	93	Right-handed alpha
Helix 48	AF3	I	111	116	Right-handed alpha
Helix 49	AF4	I	117	120	Right-handed 310
Helix 50	AF5	I	158	173	Right-handed alpha
Helix 51	AF6	J	19	23	Right-handed 310
Helix 52	AF7	J	26	37	Right-handed alpha
Helix 53	AF8	J	42	57	Right-handed alpha
Helix 54	AF9	J	70	84	Right-handed alpha
Helix 55	AG1	J	86	93	Right-handed alpha
Helix 56	AG2	J	111	116	Right-handed alpha
Helix 57	AG3	J	118	120	Right-handed 310
Helix 58	AG4	J	158	173	Right-handed alpha

There are 22 sheets in PDB entry 35TW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	D	65	69	anti-parallel
Strand 3	D	100	105	anti-parallel
Strand 4	D	144	152	anti-parallel
Strand 5	D	2	10	anti-parallel
Strand 6	D	185	186	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	144	152	anti-parallel
Strand 3	D	2	10	anti-parallel
Strand 4	D	189	194	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	140	141	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	129	first strand
Strand 2	D	132	138	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	61	first strand
Strand 2	E	65	69	anti-parallel
Strand 3	E	100	105	anti-parallel
Strand 4	E	144	152	anti-parallel
Strand 5	E	95	96	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	61	first strand
Strand 2	E	65	69	anti-parallel
Strand 3	E	100	105	anti-parallel
Strand 4	E	144	152	anti-parallel
Strand 5	E	2	10	anti-parallel
Strand 6	E	185	194	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	15	first strand
Strand 2	E	132	141	anti-parallel
Strand 3	E	122	129	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	61	first strand
Strand 2	F	65	69	anti-parallel
Strand 3	F	100	105	anti-parallel
Strand 4	F	144	152	anti-parallel
Strand 5	F	94	96	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	61	first strand
Strand 2	F	65	69	anti-parallel
Strand 3	F	100	105	anti-parallel
Strand 4	F	144	152	anti-parallel
Strand 5	F	2	10	anti-parallel
Strand 6	F	185	194	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	15	first strand
Strand 2	F	132	141	anti-parallel
Strand 3	F	122	129	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	61	first strand
Strand 2	G	65	69	anti-parallel
Strand 3	G	100	105	anti-parallel
Strand 4	G	144	152	anti-parallel
Strand 5	G	2	10	anti-parallel
Strand 6	G	185	186	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	96	first strand
Strand 2	G	144	152	anti-parallel
Strand 3	G	2	10	anti-parallel
Strand 4	G	189	194	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	15	first strand
Strand 2	G	134	141	anti-parallel
Strand 3	G	122	127	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	94	96	first strand
Strand 2	H	145	152	anti-parallel
Strand 3	H	2	10	anti-parallel
Strand 4	H	185	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	132	141	anti-parallel
Strand 3	H	122	129	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	61	first strand
Strand 2	H	65	69	anti-parallel
Strand 3	H	100	102	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	94	96	first strand
Strand 2	I	145	152	anti-parallel
Strand 3	I	2	10	anti-parallel
Strand 4	I	185	194	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	15	first strand
Strand 2	I	132	141	anti-parallel
Strand 3	I	122	129	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	61	first strand
Strand 2	I	65	69	anti-parallel
Strand 3	I	100	102	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	60	61	first strand
Strand 2	J	65	69	anti-parallel
Strand 3	J	100	105	anti-parallel
Strand 4	J	144	152	anti-parallel
Strand 5	J	94	96	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	60	61	first strand
Strand 2	J	65	69	anti-parallel
Strand 3	J	100	105	anti-parallel
Strand 4	J	144	152	anti-parallel
Strand 5	J	2	10	anti-parallel
Strand 6	J	185	194	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	14	15	first strand
Strand 2	J	132	141	anti-parallel
Strand 3	J	122	129	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 35TW

Analysis of interatomic Contacts of Structural Units in PDB entry:
35TW