Analysis of interatomic Contacts of Structural Units in PDB entry:
35VB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 35VB entry

There are 2 chains in PDB entry 35VB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 168
B
 LYS 154ASP 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 35VB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
64 75Right-handed alpha
Helix 3
AA3
A
86 105Right-handed alpha
Helix 4
AA4
A
127 136Right-handed alpha
Helix 5
AA5
A
151 168Right-handed alpha
Helix 6
AA6
B
176 181Right-handed alpha
Helix 7
AA7
B
181 187Right-handed alpha
Helix 8
AA8
B
191 193Right-handed 310
Helix 9
AA9
B
213 218Right-handed 310
Helix 10
AB1
B
270 274Right-handed 310
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There are 3 sheets in PDB entry 35VB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
111 116parallel
Strand 3
A
77 83parallel
Strand 4
A
2 10parallel
Strand 5
A
49 57parallel
Strand 6
A
37 46anti-parallel
Strand 7
B
165 170anti-parallel
Strand 8
B
156 161anti-parallel
Strand 9
B
221 226parallel
Strand 10
B
195 201anti-parallel
Strand 11
B
204 208anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
280 281anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 241first strand
Strand 2
B
257 261anti-parallel
Strand 3
B
267 268anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il