Analysis of interatomic Contacts of Structural Units in PDB entry:
35YM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 35YM entry

There are 2 chains in PDB entry 35YM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 9	ASN 518
B	LEU 9	ASN 518

There are 44 helices in PDB entry 35YM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	26	Right-handed alpha
Helix 2	AA2	A	70	74	Right-handed 310
Helix 3	AA3	A	131	143	Right-handed alpha
Helix 4	AA4	A	162	169	Right-handed alpha
Helix 5	AA5	A	170	180	Right-handed alpha
Helix 6	AA6	A	181	191	Right-handed alpha
Helix 7	AA7	A	198	202	Right-handed 310
Helix 8	AA8	A	234	238	Right-handed 310
Helix 9	AA9	A	241	251	Right-handed alpha
Helix 10	AB1	A	264	278	Right-handed alpha
Helix 11	AB2	A	280	285	Right-handed alpha
Helix 12	AB3	A	291	305	Right-handed alpha
Helix 13	AB4	A	314	329	Right-handed alpha
Helix 14	AB5	A	329	347	Right-handed alpha
Helix 15	AB6	A	353	367	Right-handed alpha
Helix 16	AB7	A	370	377	Right-handed alpha
Helix 17	AB8	A	382	389	Right-handed alpha
Helix 18	AB9	A	401	403	Right-handed 310
Helix 19	AC1	A	405	407	Right-handed 310
Helix 20	AC2	A	408	417	Right-handed alpha
Helix 21	AC3	A	434	438	Right-handed 310
Helix 22	AC4	A	449	453	Right-handed 310
Helix 23	AC5	B	20	25	Right-handed alpha
Helix 24	AC6	B	70	74	Right-handed 310
Helix 25	AC7	B	131	143	Right-handed alpha
Helix 26	AC8	B	162	169	Right-handed alpha
Helix 27	AC9	B	170	181	Right-handed alpha
Helix 28	AD1	B	181	191	Right-handed alpha
Helix 29	AD2	B	198	202	Right-handed 310
Helix 30	AD3	B	234	238	Right-handed 310
Helix 31	AD4	B	241	252	Right-handed alpha
Helix 32	AD5	B	264	278	Right-handed alpha
Helix 33	AD6	B	280	285	Right-handed alpha
Helix 34	AD7	B	291	305	Right-handed alpha
Helix 35	AD8	B	314	329	Right-handed alpha
Helix 36	AD9	B	329	347	Right-handed alpha
Helix 37	AE1	B	353	367	Right-handed alpha
Helix 38	AE2	B	370	377	Right-handed alpha
Helix 39	AE3	B	382	389	Right-handed alpha
Helix 40	AE4	B	400	404	Right-handed alpha
Helix 41	AE5	B	405	407	Right-handed 310
Helix 42	AE6	B	408	417	Right-handed alpha
Helix 43	AE7	B	432	438	Right-handed 310
Helix 44	AE8	B	449	453	Right-handed 310

There are 14 sheets in PDB entry 35YM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	110	122	anti-parallel
Strand 3	A	41	53	anti-parallel
Strand 4	A	84	88	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	93	97	anti-parallel
Strand 3	A	62	67	anti-parallel
Strand 4	A	75	79	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	146	150	parallel
Strand 3	A	154	159	anti-parallel
Strand 4	A	208	212	parallel
Strand 5	A	227	229	parallel
Strand 6	A	220	222	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	369	first strand
Strand 2	A	395	399	parallel
Strand 3	A	428	430	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	483	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	511	514	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	471	first strand
Strand 2	A	457	462	anti-parallel
Strand 3	A	485	491	anti-parallel
Strand 4	A	502	505	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	498	first strand
Strand 2	A	516	517	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	110	122	anti-parallel
Strand 3	B	41	53	anti-parallel
Strand 4	B	84	88	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	93	97	anti-parallel
Strand 3	B	62	67	anti-parallel
Strand 4	B	75	79	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	146	150	parallel
Strand 3	B	154	159	anti-parallel
Strand 4	B	208	212	parallel
Strand 5	B	227	229	parallel
Strand 6	B	220	222	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	369	first strand
Strand 2	B	395	399	parallel
Strand 3	B	428	430	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	483	first strand
Strand 2	B	440	447	anti-parallel
Strand 3	B	511	514	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	471	first strand
Strand 2	B	457	462	anti-parallel
Strand 3	B	485	491	anti-parallel
Strand 4	B	502	505	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	498	first strand
Strand 2	B	516	517	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 35YM

Analysis of interatomic Contacts of Structural Units in PDB entry:
35YM