Analysis of interatomic Contacts of Structural Units in PDB entry:
35ZV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 35ZV entry

There are 4 chains in PDB entry 35ZV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 40	VAL 237
I	MET 138	GLU 395
J	MET 1	ILE 6
M	MET 1	PRO 417

There are 27 helices in PDB entry 35ZV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	40	58	Right-handed alpha
Helix 2	AA2	C	60	62	Right-handed 310
Helix 3	AA3	C	63	77	Right-handed alpha
Helix 4	AA4	C	88	93	Right-handed alpha
Helix 5	AA5	C	95	106	Right-handed alpha
Helix 6	AA6	C	108	126	Right-handed alpha
Helix 7	AA7	C	132	141	Right-handed alpha
Helix 8	AA8	C	146	149	Right-handed 310
Helix 9	AA9	C	150	170	Right-handed alpha
Helix 10	AB1	C	196	214	Right-handed alpha
Helix 11	AB2	C	216	227	Right-handed alpha
Helix 12	AB3	C	229	237	Right-handed 310
Helix 13	AB4	I	146	150	Right-handed 310
Helix 14	AB5	I	153	164	Right-handed alpha
Helix 15	AB6	I	164	170	Right-handed alpha
Helix 16	AB7	I	171	178	Right-handed alpha
Helix 17	AB8	I	194	207	Right-handed alpha
Helix 18	AB9	I	216	219	Right-handed 310
Helix 19	AC1	I	226	240	Right-handed alpha
Helix 20	AC2	I	267	282	Right-handed alpha
Helix 21	AC3	I	301	306	Right-handed alpha
Helix 22	AC4	I	320	332	Right-handed alpha
Helix 23	AC5	I	342	350	Right-handed alpha
Helix 24	AC6	I	354	372	Right-handed alpha
Helix 25	AC7	I	378	395	Right-handed alpha
Helix 26	AC8	M	13	20	Right-handed alpha
Helix 27	AC9	M	88	91	Right-handed 310

There are 10 sheets in PDB entry 35ZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	139	140	first strand
Strand 2	I	209	214	anti-parallel
Strand 3	I	243	248	parallel
Strand 4	I	288	294	parallel
Strand 5	I	184	188	parallel
Strand 6	I	312	315	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	5	first strand
Strand 2	M	325	329	parallel
Strand 3	M	311	316	anti-parallel
Strand 4	M	302	307	anti-parallel
Strand 5	M	290	295	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	8	10	first strand
Strand 2	M	26	33	anti-parallel
Strand 3	M	39	47	anti-parallel
Strand 4	M	52	54	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	60	63	first strand
Strand 2	M	68	73	anti-parallel
Strand 3	M	76	81	anti-parallel
Strand 4	M	376	378	parallel
Strand 5	M	353	360	anti-parallel
Strand 6	M	344	349	anti-parallel
Strand 7	M	335	341	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	60	63	first strand
Strand 2	M	68	73	anti-parallel
Strand 3	M	76	81	anti-parallel
Strand 4	M	376	378	parallel
Strand 5	M	353	360	anti-parallel
Strand 6	M	369	370	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	85	86	first strand
Strand 2	M	408	413	anti-parallel
Strand 3	M	398	404	anti-parallel
Strand 4	M	385	392	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	96	102	first strand
Strand 2	M	108	113	anti-parallel
Strand 3	M	118	121	anti-parallel
Strand 4	M	127	131	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	139	144	first strand
Strand 2	M	150	155	anti-parallel
Strand 3	M	159	164	anti-parallel
Strand 4	M	172	175	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	181	187	first strand
Strand 2	M	192	197	anti-parallel
Strand 3	M	201	206	anti-parallel
Strand 4	M	211	217	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	226	232	first strand
Strand 2	M	258	263	anti-parallel
Strand 3	M	268	272	anti-parallel
Strand 4	M	277	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 35ZV

Analysis of interatomic Contacts of Structural Units in PDB entry:
35ZV