Analysis of interatomic Contacts of Structural Units in PDB entry:
36CR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 36CR entry

There are 3 chains in PDB entry 36CR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 15TYR 25
B
 SER 2SER 427
C
 MET 1LYS 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 36CR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
74 79Right-handed alpha
Helix 2
AA2
B
79 89Right-handed alpha
Helix 3
AA3
B
90 92Right-handed 310
Helix 4
AA4
B
107 111Right-handed 310
Helix 5
AA5
B
122 136Right-handed alpha
Helix 6
AA6
B
148 152Right-handed 310
Helix 7
AA7
B
153 160Right-handed alpha
Helix 8
AA8
B
192 213Right-handed alpha
Helix 9
AA9
B
215 224Right-handed alpha
Helix 10
AB1
B
301 306Right-handed alpha
Helix 11
AB2
B
310 315Right-handed alpha
Helix 12
AB3
B
317 322Right-handed alpha
Helix 13
AB4
B
332 334Right-handed 310
Helix 14
AB5
B
349 353Right-handed 310
Helix 15
AB6
B
360 364Right-handed 310
Helix 16
AB7
B
379 385Right-handed alpha
Helix 17
AB8
B
387 392Right-handed 310
Helix 18
AB9
B
419 425Right-handed alpha
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There are 9 sheets in PDB entry 36CR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
403 416anti-parallel
Strand 3
B
17 23anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
403 416anti-parallel
Strand 3
B
41 52anti-parallel
Strand 4
B
267 277anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
27 36anti-parallel
Strand 3
B
282 291anti-parallel
Strand 4
B
63 73anti-parallel
Strand 5
B
236 245anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
119 121anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 251first strand
Strand 2
B
261 265anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 330first strand
Strand 2
B
343 346anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 17first strand
Strand 2
C
39 49parallel
Strand 3
C
22 23parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 17first strand
Strand 2
C
39 49parallel
Strand 3
C
154 163anti-parallel
Strand 4
C
70 81anti-parallel
Strand 5
C
120 130anti-parallel
Strand 6
C
115 117anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 37first strand
Strand 2
C
53 61parallel
Strand 3
C
139 149anti-parallel
Strand 4
C
88 96anti-parallel
Strand 5
C
107 111anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il