Analysis of interatomic Contacts of Structural Units in PDB entry:
36OF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 36OF entry

There are 3 chains in PDB entry 36OF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ARG 294
B
 C -1 C 24
C
 G -2 G 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 36OF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
41 43Right-handed 310
Helix 3
AA3
A
44 56Right-handed alpha
Helix 4
AA4
A
74 88Right-handed alpha
Helix 5
AA5
A
93 110Right-handed alpha
Helix 6
AA6
A
111 114Right-handed 310
Helix 7
AA7
A
115 127Right-handed alpha
Helix 8
AA8
A
134 141Right-handed alpha
Helix 9
AA9
A
159 171Right-handed alpha
Helix 10
AB1
A
198 200Right-handed 310
Helix 11
AB2
A
201 213Right-handed alpha
Helix 12
AB3
A
234 241Right-handed alpha
Helix 13
AB4
A
241 249Right-handed alpha
Helix 14
AB5
A
254 271Right-handed alpha
Helix 15
AB6
A
272 275Right-handed 310
Helix 16
AB7
A
276 289Right-handed alpha
Helix 17
AB8
A
290 294Right-handed 310
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There are 2 sheets in PDB entry 36OF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 22first strand
Strand 2
A
30 40anti-parallel
Strand 3
A
68 72anti-parallel
Strand 4
A
59 62anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 179first strand
Strand 2
A
187 197anti-parallel
Strand 3
A
227 232anti-parallel
Strand 4
A
216 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il