Analysis of interatomic Contacts of Structural Units in PDB entry:
36YL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 36YL entry

There are 4 chains in PDB entry 36YL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 397
B	MET 1	LEU 397
C	MET 1	LEU 397
D	ARG 3	LEU 397

There are 66 helices in PDB entry 36YL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	36	48	Right-handed alpha
Helix 3	AA3	A	61	73	Right-handed alpha
Helix 4	AA4	A	82	84	Right-handed 310
Helix 5	AA5	A	85	97	Right-handed alpha
Helix 6	AA6	A	116	121	Right-handed alpha
Helix 7	AA7	A	122	129	Right-handed alpha
Helix 8	AA8	A	142	155	Right-handed alpha
Helix 9	AA9	A	186	191	Right-handed alpha
Helix 10	AB1	A	229	238	Right-handed alpha
Helix 11	AB2	A	251	264	Right-handed alpha
Helix 12	AB3	A	280	289	Right-handed alpha
Helix 13	AB4	A	328	336	Right-handed alpha
Helix 14	AB5	A	338	357	Right-handed alpha
Helix 15	AB6	A	369	371	Right-handed 310
Helix 16	AB7	A	372	384	Right-handed alpha
Helix 17	AB8	B	10	23	Right-handed alpha
Helix 18	AB9	B	36	48	Right-handed alpha
Helix 19	AC1	B	61	73	Right-handed alpha
Helix 20	AC2	B	82	84	Right-handed 310
Helix 21	AC3	B	85	97	Right-handed alpha
Helix 22	AC4	B	116	121	Right-handed alpha
Helix 23	AC5	B	122	129	Right-handed alpha
Helix 24	AC6	B	142	155	Right-handed alpha
Helix 25	AC7	B	186	191	Right-handed alpha
Helix 26	AC8	B	229	238	Right-handed alpha
Helix 27	AC9	B	251	264	Right-handed alpha
Helix 28	AD1	B	281	289	Right-handed alpha
Helix 29	AD2	B	339	357	Right-handed alpha
Helix 30	AD3	B	369	371	Right-handed 310
Helix 31	AD4	B	372	384	Right-handed alpha
Helix 32	AD5	C	10	23	Right-handed alpha
Helix 33	AD6	C	36	48	Right-handed alpha
Helix 34	AD7	C	61	73	Right-handed alpha
Helix 35	AD8	C	82	84	Right-handed 310
Helix 36	AD9	C	85	96	Right-handed alpha
Helix 37	AE1	C	116	121	Right-handed alpha
Helix 38	AE2	C	122	129	Right-handed alpha
Helix 39	AE3	C	142	155	Right-handed alpha
Helix 40	AE4	C	168	172	Right-handed 310
Helix 41	AE5	C	181	191	Right-handed alpha
Helix 42	AE6	C	229	238	Right-handed alpha
Helix 43	AE7	C	251	264	Right-handed alpha
Helix 44	AE8	C	280	289	Right-handed alpha
Helix 45	AE9	C	291	296	Right-handed 310
Helix 46	AF1	C	328	336	Right-handed alpha
Helix 47	AF2	C	338	357	Right-handed alpha
Helix 48	AF3	C	369	371	Right-handed 310
Helix 49	AF4	C	372	384	Right-handed alpha
Helix 50	AF5	D	10	23	Right-handed alpha
Helix 51	AF6	D	36	48	Right-handed alpha
Helix 52	AF7	D	61	71	Right-handed alpha
Helix 53	AF8	D	82	84	Right-handed 310
Helix 54	AF9	D	85	95	Right-handed alpha
Helix 55	AG1	D	116	121	Right-handed alpha
Helix 56	AG2	D	122	129	Right-handed alpha
Helix 57	AG3	D	142	155	Right-handed alpha
Helix 58	AG4	D	181	191	Right-handed alpha
Helix 59	AG5	D	229	238	Right-handed alpha
Helix 60	AG6	D	251	264	Right-handed alpha
Helix 61	AG7	D	280	289	Right-handed alpha
Helix 62	AG8	D	291	296	Right-handed 310
Helix 63	AG9	D	328	336	Right-handed alpha
Helix 64	AH1	D	338	357	Right-handed alpha
Helix 65	AH2	D	369	371	Right-handed 310
Helix 66	AH3	D	372	384	Right-handed alpha

There are 15 sheets in PDB entry 36YL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	29	34	parallel
Strand 3	A	3	7	parallel
Strand 4	A	76	79	parallel
Strand 5	A	99	102	parallel
Strand 6	A	132	135	parallel
Strand 7	A	364	367	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	204	first strand
Strand 2	A	193	197	anti-parallel
Strand 3	A	243	249	anti-parallel
Strand 4	A	219	226	anti-parallel
Strand 5	A	210	215	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	204	first strand
Strand 2	A	193	197	anti-parallel
Strand 3	A	243	249	anti-parallel
Strand 4	A	158	166	parallel
Strand 5	A	302	313	anti-parallel
Strand 6	A	316	327	anti-parallel
Strand 7	A	387	391	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	277	279	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	29	34	parallel
Strand 3	B	3	7	parallel
Strand 4	B	76	79	parallel
Strand 5	B	99	102	parallel
Strand 6	B	132	135	parallel
Strand 7	B	364	367	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	204	first strand
Strand 2	B	193	197	anti-parallel
Strand 3	B	243	249	anti-parallel
Strand 4	B	219	226	anti-parallel
Strand 5	B	210	215	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	204	first strand
Strand 2	B	193	197	anti-parallel
Strand 3	B	243	249	anti-parallel
Strand 4	B	158	167	parallel
Strand 5	B	303	313	anti-parallel
Strand 6	B	316	326	anti-parallel
Strand 7	B	388	391	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	29	34	parallel
Strand 3	C	3	7	parallel
Strand 4	C	76	79	parallel
Strand 5	C	99	102	parallel
Strand 6	C	132	135	parallel
Strand 7	C	364	367	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	204	first strand
Strand 2	C	193	197	anti-parallel
Strand 3	C	243	249	anti-parallel
Strand 4	C	219	226	anti-parallel
Strand 5	C	210	215	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	204	first strand
Strand 2	C	193	197	anti-parallel
Strand 3	C	243	249	anti-parallel
Strand 4	C	158	167	parallel
Strand 5	C	302	313	anti-parallel
Strand 6	C	316	327	anti-parallel
Strand 7	C	388	391	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	30	34	parallel
Strand 3	D	4	6	parallel
Strand 4	D	76	79	parallel
Strand 5	D	101	102	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	135	first strand
Strand 2	D	364	367	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	203	first strand
Strand 2	D	194	197	anti-parallel
Strand 3	D	243	249	anti-parallel
Strand 4	D	219	225	anti-parallel
Strand 5	D	210	215	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	203	first strand
Strand 2	D	194	197	anti-parallel
Strand 3	D	243	249	anti-parallel
Strand 4	D	158	167	parallel
Strand 5	D	302	313	anti-parallel
Strand 6	D	316	327	anti-parallel
Strand 7	D	388	391	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	273	first strand
Strand 2	D	278	279	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 36YL

Analysis of interatomic Contacts of Structural Units in PDB entry:
36YL