Analysis of interatomic Contacts of Structural Units in PDB entry:
38FU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 38FU entry

There are 3 chains in PDB entry 38FU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 28ARG 496
B
 HIS 28ARG 496
C
 HIS 28ARG 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 38FU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 30Right-handed 310
Helix 2
AA2
A
31 37Right-handed alpha
Helix 3
AA3
A
49 55Right-handed 310
Helix 4
AA4
A
56 69Right-handed alpha
Helix 5
AA5
A
86 95Right-handed alpha
Helix 6
AA6
A
96 100Right-handed 310
Helix 7
AA7
A
111 117Right-handed 310
Helix 8
AA8
A
122 134Right-handed alpha
Helix 9
AA9
A
135 137Right-handed 310
Helix 10
AB1
A
138 167Right-handed alpha
Helix 11
AB2
A
172 190Right-handed alpha
Helix 12
AB3
A
201 209Right-handed alpha
Helix 13
AB4
A
217 226Right-handed alpha
Helix 14
AB5
A
228 236Right-handed alpha
Helix 15
AB6
A
242 263Right-handed alpha
Helix 16
AB7
A
270 281Right-handed alpha
Helix 17
AB8
A
291 324Right-handed alpha
Helix 18
AB9
A
324 339Right-handed alpha
Helix 19
AC1
A
340 343Right-handed 310
Helix 20
AC2
A
346 351Right-handed alpha
Helix 21
AC3
A
353 367Right-handed alpha
Helix 22
AC4
A
397 402Right-handed alpha
Helix 23
AC5
A
415 420Right-handed 310
Helix 24
AC6
A
423 427Right-handed 310
Helix 25
AC7
A
444 462Right-handed alpha
Helix 26
AC8
B
28 30Right-handed 310
Helix 27
AC9
B
31 37Right-handed alpha
Helix 28
AD1
B
49 55Right-handed 310
Helix 29
AD2
B
56 69Right-handed alpha
Helix 30
AD3
B
86 95Right-handed alpha
Helix 31
AD4
B
96 100Right-handed 310
Helix 32
AD5
B
111 117Right-handed 310
Helix 33
AD6
B
122 134Right-handed alpha
Helix 34
AD7
B
135 137Right-handed 310
Helix 35
AD8
B
138 167Right-handed alpha
Helix 36
AD9
B
172 190Right-handed alpha
Helix 37
AE1
B
201 209Right-handed alpha
Helix 38
AE2
B
217 226Right-handed alpha
Helix 39
AE3
B
228 236Right-handed alpha
Helix 40
AE4
B
242 263Right-handed alpha
Helix 41
AE5
B
270 281Right-handed alpha
Helix 42
AE6
B
291 324Right-handed alpha
Helix 43
AE7
B
324 339Right-handed alpha
Helix 44
AE8
B
340 343Right-handed 310
Helix 45
AE9
B
346 351Right-handed alpha
Helix 46
AF1
B
353 367Right-handed alpha
Helix 47
AF2
B
397 402Right-handed alpha
Helix 48
AF3
B
415 420Right-handed 310
Helix 49
AF4
B
423 427Right-handed 310
Helix 50
AF5
B
444 462Right-handed alpha
Helix 51
AF6
C
28 30Right-handed 310
Helix 52
AF7
C
31 37Right-handed alpha
Helix 53
AF8
C
49 55Right-handed 310
Helix 54
AF9
C
56 69Right-handed alpha
Helix 55
AG1
C
86 95Right-handed alpha
Helix 56
AG2
C
96 100Right-handed 310
Helix 57
AG3
C
111 117Right-handed 310
Helix 58
AG4
C
122 134Right-handed alpha
Helix 59
AG5
C
135 137Right-handed 310
Helix 60
AG6
C
138 167Right-handed alpha
Helix 61
AG7
C
172 190Right-handed alpha
Helix 62
AG8
C
201 209Right-handed alpha
Helix 63
AG9
C
217 226Right-handed alpha
Helix 64
AH1
C
228 236Right-handed alpha
Helix 65
AH2
C
242 263Right-handed alpha
Helix 66
AH3
C
270 281Right-handed alpha
Helix 67
AH4
C
291 324Right-handed alpha
Helix 68
AH5
C
324 339Right-handed alpha
Helix 69
AH6
C
340 343Right-handed 310
Helix 70
AH7
C
346 351Right-handed alpha
Helix 71
AH8
C
353 367Right-handed alpha
Helix 72
AH9
C
397 402Right-handed alpha
Helix 73
AI1
C
415 420Right-handed 310
Helix 74
AI2
C
423 427Right-handed 310
Helix 75
AI3
C
444 462Right-handed alpha
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There are 9 sheets in PDB entry 38FU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
393 396parallel
Strand 4
A
373 376anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
490 495anti-parallel
Strand 3
A
463 466anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
386 388anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 76first strand
Strand 2
B
79 83anti-parallel
Strand 3
B
393 396parallel
Strand 4
B
373 376anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
490 495anti-parallel
Strand 3
B
463 466anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
386 388anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 76first strand
Strand 2
C
79 83anti-parallel
Strand 3
C
393 396parallel
Strand 4
C
373 376anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 171first strand
Strand 2
C
490 495anti-parallel
Strand 3
C
463 466anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
381 383first strand
Strand 2
C
386 388anti-parallel
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