Analysis of interatomic Contacts of Structural Units in PDB entry:
38LI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 38LI entry

There are 3 chains in PDB entry 38LI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 571ARG 692
B
 ALA 564ARG 692
C
 HIS 565ARG 692
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 38LI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
572 576Right-handed 310
Helix 2
AA2
A
583 589Right-handed alpha
Helix 3
AA3
A
633 638Right-handed alpha
Helix 4
AA4
B
567 571Right-handed 310
Helix 5
AA5
B
572 576Right-handed 310
Helix 6
AA6
B
583 589Right-handed alpha
Helix 7
AA7
B
633 638Right-handed alpha
Helix 8
AA8
C
568 576Right-handed 310
Helix 9
AA9
C
583 589Right-handed alpha
Helix 10
AB1
C
633 638Right-handed alpha
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There are 9 sheets in PDB entry 38LI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 626first strand
Strand 2
A
610 615anti-parallel
Strand 3
A
592 602anti-parallel
Strand 4
A
641 645anti-parallel
Strand 5
A
661 662anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 653first strand
Strand 2
A
656 658anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
690 692first strand
Strand 2
B
664 666anti-parallel
Strand 3
B
676 681anti-parallel
Strand 4
A
677 681anti-parallel
Strand 5
A
664 666anti-parallel
Strand 6
B
690 692anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
622 626first strand
Strand 2
B
610 615anti-parallel
Strand 3
B
592 602anti-parallel
Strand 4
B
641 645anti-parallel
Strand 5
B
661 662anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
651 653first strand
Strand 2
B
656 658anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
621 626first strand
Strand 2
C
610 615anti-parallel
Strand 3
C
592 602anti-parallel
Strand 4
C
641 645anti-parallel
Strand 5
C
661 662anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
621 626first strand
Strand 2
C
610 615anti-parallel
Strand 3
C
592 602anti-parallel
Strand 4
C
690 691anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
651 653first strand
Strand 2
C
656 658anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
664 665first strand
Strand 2
C
677 678anti-parallel
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