Analysis of interatomic Contacts of Structural Units in PDB entry:
38LJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 38LJ entry

There is 1 chain in PDB entry 38LJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1LEU 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 38LJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
33 44Right-handed alpha
Helix 3
AA3
A
45 58Right-handed alpha
Helix 4
AA4
A
62 75Right-handed alpha
Helix 5
AA5
A
76 83Right-handed alpha
Helix 6
AA6
A
92 102Right-handed alpha
Helix 7
AA7
A
115 117Right-handed 310
Helix 8
AA8
A
118 125Right-handed alpha
Helix 9
AA9
A
144 149Right-handed alpha
Helix 10
AB1
A
158 180Right-handed alpha
Helix 11
AB2
A
192 208Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 38LJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
84 87parallel
Strand 3
A
4 8parallel
Strand 4
A
108 113parallel
Strand 5
A
184 188parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
135 137anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il