Analysis of interatomic Contacts of Structural Units in PDB entry:
38OD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 38OD entry

There are 2 chains in PDB entry 38OD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 619
B
 MET 1PHE 617
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 38OD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
10 14Right-handed 310
Helix 3
AA3
A
17 26Right-handed alpha
Helix 4
AA4
A
40 60Right-handed alpha
Helix 5
AA5
A
107 118Right-handed alpha
Helix 6
AA6
A
123 133Right-handed alpha
Helix 7
AA7
A
136 145Right-handed alpha
Helix 8
AA8
A
146 155Right-handed alpha
Helix 9
AA9
A
174 196Right-handed alpha
Helix 10
AB1
A
202 229Right-handed alpha
Helix 11
AB2
A
239 258Right-handed alpha
Helix 12
AB3
A
268 283Right-handed alpha
Helix 13
AB4
A
286 303Right-handed alpha
Helix 14
AB5
A
309 316Right-handed alpha
Helix 15
AB6
A
339 352Right-handed alpha
Helix 16
AB7
A
369 384Right-handed alpha
Helix 17
AB8
A
391 399Right-handed alpha
Helix 18
AB9
A
426 435Right-handed alpha
Helix 19
AC1
A
459 493Right-handed alpha
Helix 20
AC2
A
495 500Right-handed alpha
Helix 21
AC3
A
516 530Right-handed alpha
Helix 22
AC4
A
558 577Right-handed alpha
Helix 23
AC5
A
581 585Right-handed 310
Helix 24
AC6
A
598 604Right-handed alpha
Helix 25
AC7
B
1 5Right-handed 310
Helix 26
AC8
B
10 14Right-handed 310
Helix 27
AC9
B
17 26Right-handed alpha
Helix 28
AD1
B
40 60Right-handed alpha
Helix 29
AD2
B
107 118Right-handed alpha
Helix 30
AD3
B
123 133Right-handed alpha
Helix 31
AD4
B
136 145Right-handed alpha
Helix 32
AD5
B
146 156Right-handed alpha
Helix 33
AD6
B
174 196Right-handed alpha
Helix 34
AD7
B
202 229Right-handed alpha
Helix 35
AD8
B
239 258Right-handed alpha
Helix 36
AD9
B
268 283Right-handed alpha
Helix 37
AE1
B
286 303Right-handed alpha
Helix 38
AE2
B
339 352Right-handed alpha
Helix 39
AE3
B
369 384Right-handed alpha
Helix 40
AE4
B
391 399Right-handed alpha
Helix 41
AE5
B
426 435Right-handed alpha
Helix 42
AE6
B
459 493Right-handed alpha
Helix 43
AE7
B
495 500Right-handed alpha
Helix 44
AE8
B
516 530Right-handed alpha
Helix 45
AE9
B
558 577Right-handed alpha
Helix 46
AF1
B
581 585Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 38OD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 71first strand
Strand 2
A
99 102parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 328first strand
Strand 2
A
359 364parallel
Strand 3
A
386 390parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 405first strand
Strand 2
A
409 412anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 420first strand
Strand 2
A
507 515parallel
Strand 3
A
424 425parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 420first strand
Strand 2
A
507 515parallel
Strand 3
A
586 590parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 536first strand
Strand 2
A
542 548anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 71first strand
Strand 2
B
99 102parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 328first strand
Strand 2
B
359 364parallel
Strand 3
B
386 390parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 403first strand
Strand 2
B
411 412anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 420first strand
Strand 2
B
507 515parallel
Strand 3
B
424 425parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 420first strand
Strand 2
B
507 515parallel
Strand 3
B
586 590parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 536first strand
Strand 2
B
542 548anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il