Analysis of interatomic Contacts of Structural Units in PDB entry:
38RI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 38RI entry

There are 2 chains in PDB entry 38RI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PHE 992
B
 MET 1ARG 758
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 38RI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 18Right-handed alpha
Helix 2
AA2
A
25 29Right-handed 310
Helix 3
AA3
A
35 39Right-handed 310
Helix 4
AA4
A
42 55Right-handed alpha
Helix 5
AA5
A
61 71Right-handed alpha
Helix 6
AA6
A
75 89Right-handed alpha
Helix 7
AA7
A
97 108Right-handed alpha
Helix 8
AA8
A
124 135Right-handed alpha
Helix 9
AA9
A
138 147Right-handed alpha
Helix 10
AB1
A
155 165Right-handed alpha
Helix 11
AB2
A
168 185Right-handed alpha
Helix 12
AB3
A
195 198Right-handed 310
Helix 13
AB4
A
199 211Right-handed alpha
Helix 14
AB5
A
212 217Right-handed alpha
Helix 15
AB6
A
220 229Right-handed alpha
Helix 16
AB7
A
231 243Right-handed alpha
Helix 17
AB8
A
246 248Right-handed 310
Helix 18
AB9
A
249 261Right-handed alpha
Helix 19
AC1
A
261 274Right-handed alpha
Helix 20
AC2
A
277 283Right-handed alpha
Helix 21
AC3
A
286 305Right-handed alpha
Helix 22
AC4
A
306 309Right-handed 310
Helix 23
AC5
A
314 325Right-handed alpha
Helix 24
AC6
A
325 337Right-handed alpha
Helix 25
AC7
A
341 346Right-handed alpha
Helix 26
AC8
A
347 354Right-handed alpha
Helix 27
AC9
A
354 386Right-handed alpha
Helix 28
AD1
A
388 392Right-handed 310
Helix 29
AD2
A
393 431Right-handed alpha
Helix 30
AD3
A
451 464Right-handed alpha
Helix 31
AD4
A
494 498Right-handed 310
Helix 32
AD5
A
519 523Right-handed 310
Helix 33
AD6
A
526 532Right-handed alpha
Helix 34
AD7
A
535 544Right-handed alpha
Helix 35
AD8
A
546 555Right-handed alpha
Helix 36
AD9
A
555 566Right-handed alpha
Helix 37
AE1
A
581 591Right-handed alpha
Helix 38
AE2
A
651 661Right-handed alpha
Helix 39
AE3
A
664 679Right-handed alpha
Helix 40
AE4
A
703 708Right-handed 310
Helix 41
AE5
A
709 713Right-handed 310
Helix 42
AE6
A
717 730Right-handed alpha
Helix 43
AE7
A
730 741Right-handed alpha
Helix 44
AE8
A
767 771Right-handed 310
Helix 45
AE9
A
772 774Right-handed 310
Helix 46
AF1
A
775 801Right-handed alpha
Helix 47
AF2
A
805 811Right-handed alpha
Helix 48
AF3
A
812 815Right-handed 310
Helix 49
AF4
A
835 839Right-handed 310
Helix 50
AF5
A
854 858Right-handed 310
Helix 51
AF6
A
861 870Right-handed alpha
Helix 52
AF7
A
870 888Right-handed alpha
Helix 53
AF8
A
896 898Right-handed 310
Helix 54
AF9
A
921 925Right-handed alpha
Helix 55
AG1
A
945 956Right-handed alpha
Helix 56
AG2
A
956 965Right-handed alpha
Helix 57
AG3
B
2 21Right-handed alpha
Helix 58
AG4
B
22 47Right-handed alpha
Helix 59
AG5
B
60 85Right-handed alpha
Helix 60
AG6
B
90 111Right-handed alpha
Helix 61
AG7
B
113 133Right-handed alpha
Helix 62
AG8
B
138 171Right-handed alpha
Helix 63
AG9
B
174 183Right-handed alpha
Helix 64
AH1
B
186 188Right-handed 310
Helix 65
AH2
B
189 205Right-handed alpha
Helix 66
AH3
B
211 216Right-handed alpha
Helix 67
AH4
B
221 232Right-handed alpha
Helix 68
AH5
B
234 243Right-handed alpha
Helix 69
AH6
B
244 250Right-handed 310
Helix 70
AH7
B
252 272Right-handed alpha
Helix 71
AH8
B
277 299Right-handed alpha
Helix 72
AH9
B
301 322Right-handed alpha
Helix 73
AI1
B
325 332Right-handed alpha
Helix 74
AI2
B
333 336Right-handed 310
Helix 75
AI3
B
339 346Right-handed alpha
Helix 76
AI4
B
351 354Right-handed 310
Helix 77
AI5
B
355 379Right-handed alpha
Helix 78
AI6
B
386 408Right-handed alpha
Helix 79
AI7
B
414 445Right-handed alpha
Helix 80
AI8
B
449 458Right-handed alpha
Helix 81
AI9
B
461 489Right-handed alpha
Helix 82
AJ1
B
495 504Right-handed alpha
Helix 83
AJ2
B
507 530Right-handed alpha
Helix 84
AJ3
B
548 560Right-handed alpha
Helix 85
AJ4
B
562 576Right-handed alpha
Helix 86
AJ5
B
576 595Right-handed alpha
Helix 87
AJ6
B
600 619Right-handed alpha
Helix 88
AJ7
B
623 637Right-handed alpha
Helix 89
AJ8
B
637 643Right-handed alpha
Helix 90
AJ9
B
646 669Right-handed alpha
Helix 91
AK1
B
678 683Right-handed alpha
Helix 92
AK2
B
683 698Right-handed alpha
Helix 93
AK3
B
703 715Right-handed alpha
Helix 94
AK4
B
717 739Right-handed alpha
Helix 95
AK5
B
740 744Right-handed 310
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There are 7 sheets in PDB entry 38RI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
B
492 493parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 472first strand
Strand 2
A
444 449parallel
Strand 3
A
688 695parallel
Strand 4
A
750 757parallel
Strand 5
A
763 765anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 508first strand
Strand 2
A
573 576anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
848 851first strand
Strand 2
A
830 833parallel
Strand 3
A
939 943parallel
Strand 4
A
969 974parallel
Strand 5
A
979 984anti-parallel
Strand 6
A
987 992anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
900 903first strand
Strand 2
A
907 910anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
926 927first strand
Strand 2
A
930 931anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
57 59anti-parallel
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