Analysis of interatomic Contacts of Structural Units in PDB entry:
38RX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 38RX entry

There are 7 chains in PDB entry 38RX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 268	THR 461
B	GLY 268	THR 461
C	GLY 268	THR 461
D	GLY 268	THR 461
E	GLY 268	THR 461
F	GLY 268	THR 461
G	GLY 268	THR 461

There are 33 helices in PDB entry 38RX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	268	296	Right-handed alpha
Helix 2	AA2	A	366	370	Right-handed 310
Helix 3	AA3	A	372	387	Right-handed alpha
Helix 4	AA4	A	423	445	Right-handed alpha
Helix 5	AA5	B	269	279	Right-handed alpha
Helix 6	AA6	B	279	296	Right-handed alpha
Helix 7	AA7	B	366	370	Right-handed 310
Helix 8	AA8	B	372	386	Right-handed alpha
Helix 9	AA9	B	423	445	Right-handed alpha
Helix 10	AB1	C	269	279	Right-handed alpha
Helix 11	AB2	C	279	296	Right-handed alpha
Helix 12	AB3	C	366	370	Right-handed 310
Helix 13	AB4	C	372	386	Right-handed alpha
Helix 14	AB5	C	423	445	Right-handed alpha
Helix 15	AB6	D	269	296	Right-handed alpha
Helix 16	AB7	D	366	370	Right-handed 310
Helix 17	AB8	D	372	386	Right-handed alpha
Helix 18	AB9	D	423	445	Right-handed alpha
Helix 19	AC1	E	269	279	Right-handed alpha
Helix 20	AC2	E	279	296	Right-handed alpha
Helix 21	AC3	E	366	370	Right-handed 310
Helix 22	AC4	E	372	387	Right-handed alpha
Helix 23	AC5	E	423	445	Right-handed alpha
Helix 24	AC6	F	269	279	Right-handed alpha
Helix 25	AC7	F	279	296	Right-handed alpha
Helix 26	AC8	F	366	370	Right-handed 310
Helix 27	AC9	F	372	386	Right-handed alpha
Helix 28	AD1	F	423	445	Right-handed alpha
Helix 29	AD2	G	269	279	Right-handed alpha
Helix 30	AD3	G	279	296	Right-handed alpha
Helix 31	AD4	G	366	370	Right-handed 310
Helix 32	AD5	G	372	387	Right-handed alpha
Helix 33	AD6	G	423	445	Right-handed alpha

There are 9 sheets in PDB entry 38RX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 36 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	308	first strand
Strand 2	A	311	319	anti-parallel
Strand 3	A	326	330	anti-parallel
Strand 4	A	335	338	anti-parallel
Strand 5	B	348	350	anti-parallel
Strand 6	B	303	308	anti-parallel
Strand 7	B	311	319	anti-parallel
Strand 8	B	326	330	anti-parallel
Strand 9	B	335	338	anti-parallel
Strand 10	C	348	350	anti-parallel
Strand 11	C	303	308	anti-parallel
Strand 12	C	311	319	anti-parallel
Strand 13	C	326	330	anti-parallel
Strand 14	C	335	338	anti-parallel
Strand 15	D	348	350	anti-parallel
Strand 16	D	303	308	anti-parallel
Strand 17	D	311	319	anti-parallel
Strand 18	D	326	330	anti-parallel
Strand 19	D	335	338	anti-parallel
Strand 20	E	348	350	anti-parallel
Strand 21	E	303	308	anti-parallel
Strand 22	E	311	319	anti-parallel
Strand 23	E	326	330	anti-parallel
Strand 24	E	335	338	anti-parallel
Strand 25	F	348	350	anti-parallel
Strand 26	F	303	308	anti-parallel
Strand 27	F	311	319	anti-parallel
Strand 28	F	326	330	anti-parallel
Strand 29	F	335	338	anti-parallel
Strand 30	G	348	350	anti-parallel
Strand 31	G	303	308	anti-parallel
Strand 32	G	311	319	anti-parallel
Strand 33	G	326	330	anti-parallel
Strand 34	G	335	338	anti-parallel
Strand 35	A	348	350	anti-parallel
Strand 36	A	303	308	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	365	first strand
Strand 2	A	410	419	anti-parallel
Strand 3	A	398	405	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	458	first strand
Strand 2	B	453	458	parallel
Strand 3	C	453	458	parallel
Strand 4	D	453	458	parallel
Strand 5	E	453	458	parallel
Strand 6	F	453	458	parallel
Strand 7	G	453	458	parallel
Strand 8	A	453	458	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	365	first strand
Strand 2	B	410	419	anti-parallel
Strand 3	B	398	405	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	365	first strand
Strand 2	C	410	419	anti-parallel
Strand 3	C	398	405	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	365	first strand
Strand 2	D	410	419	anti-parallel
Strand 3	D	398	405	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	357	365	first strand
Strand 2	E	410	419	anti-parallel
Strand 3	E	398	405	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	357	365	first strand
Strand 2	F	410	419	anti-parallel
Strand 3	F	398	405	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	357	365	first strand
Strand 2	G	410	419	anti-parallel
Strand 3	G	398	405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 38RX

Analysis of interatomic Contacts of Structural Units in PDB entry:
38RX