Analysis of interatomic Contacts of Structural Units in PDB entry:
38TD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 38TD entry

There are 4 chains in PDB entry 38TD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 617
B	MET 1	PHE 617
C	MET 1	PHE 617
D	MET 1	PHE 617

There are100 helices in PDB entry 38TD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	16	Right-handed alpha
Helix 2	AA2	A	18	26	Right-handed alpha
Helix 3	AA3	A	41	62	Right-handed alpha
Helix 4	AA4	A	84	88	Right-handed 310
Helix 5	AA5	A	108	119	Right-handed alpha
Helix 6	AA6	A	124	134	Right-handed alpha
Helix 7	AA7	A	137	146	Right-handed alpha
Helix 8	AA8	A	147	156	Right-handed alpha
Helix 9	AA9	A	162	166	Right-handed 310
Helix 10	AB1	A	175	181	Right-handed alpha
Helix 11	AB2	A	182	196	Right-handed alpha
Helix 12	AB3	A	202	229	Right-handed alpha
Helix 13	AB4	A	239	258	Right-handed alpha
Helix 14	AB5	A	268	283	Right-handed alpha
Helix 15	AB6	A	286	303	Right-handed alpha
Helix 16	AB7	A	309	315	Right-handed alpha
Helix 17	AB8	A	339	353	Right-handed alpha
Helix 18	AB9	A	369	383	Right-handed alpha
Helix 19	AC1	A	391	399	Right-handed alpha
Helix 20	AC2	A	426	436	Right-handed alpha
Helix 21	AC3	A	459	493	Right-handed alpha
Helix 22	AC4	A	495	500	Right-handed alpha
Helix 23	AC5	A	516	530	Right-handed alpha
Helix 24	AC6	A	558	577	Right-handed alpha
Helix 25	AC7	A	581	585	Right-handed 310
Helix 26	AC8	B	11	16	Right-handed alpha
Helix 27	AC9	B	18	26	Right-handed alpha
Helix 28	AD1	B	41	62	Right-handed alpha
Helix 29	AD2	B	84	88	Right-handed 310
Helix 30	AD3	B	108	119	Right-handed alpha
Helix 31	AD4	B	124	134	Right-handed alpha
Helix 32	AD5	B	137	146	Right-handed alpha
Helix 33	AD6	B	147	156	Right-handed alpha
Helix 34	AD7	B	162	166	Right-handed 310
Helix 35	AD8	B	175	181	Right-handed alpha
Helix 36	AD9	B	182	196	Right-handed alpha
Helix 37	AE1	B	202	229	Right-handed alpha
Helix 38	AE2	B	239	258	Right-handed alpha
Helix 39	AE3	B	268	283	Right-handed alpha
Helix 40	AE4	B	286	303	Right-handed alpha
Helix 41	AE5	B	309	315	Right-handed alpha
Helix 42	AE6	B	339	353	Right-handed alpha
Helix 43	AE7	B	369	383	Right-handed alpha
Helix 44	AE8	B	391	399	Right-handed alpha
Helix 45	AE9	B	426	436	Right-handed alpha
Helix 46	AF1	B	459	493	Right-handed alpha
Helix 47	AF2	B	495	500	Right-handed alpha
Helix 48	AF3	B	516	530	Right-handed alpha
Helix 49	AF4	B	558	577	Right-handed alpha
Helix 50	AF5	B	581	585	Right-handed 310
Helix 51	AF6	C	11	16	Right-handed alpha
Helix 52	AF7	C	18	26	Right-handed alpha
Helix 53	AF8	C	41	62	Right-handed alpha
Helix 54	AF9	C	84	88	Right-handed 310
Helix 55	AG1	C	108	119	Right-handed alpha
Helix 56	AG2	C	124	134	Right-handed alpha
Helix 57	AG3	C	137	146	Right-handed alpha
Helix 58	AG4	C	147	156	Right-handed alpha
Helix 59	AG5	C	162	166	Right-handed 310
Helix 60	AG6	C	175	181	Right-handed alpha
Helix 61	AG7	C	182	196	Right-handed alpha
Helix 62	AG8	C	202	229	Right-handed alpha
Helix 63	AG9	C	239	258	Right-handed alpha
Helix 64	AH1	C	268	283	Right-handed alpha
Helix 65	AH2	C	286	303	Right-handed alpha
Helix 66	AH3	C	309	315	Right-handed alpha
Helix 67	AH4	C	339	353	Right-handed alpha
Helix 68	AH5	C	369	383	Right-handed alpha
Helix 69	AH6	C	391	399	Right-handed alpha
Helix 70	AH7	C	426	436	Right-handed alpha
Helix 71	AH8	C	459	493	Right-handed alpha
Helix 72	AH9	C	495	500	Right-handed alpha
Helix 73	AI1	C	516	530	Right-handed alpha
Helix 74	AI2	C	558	577	Right-handed alpha
Helix 75	AI3	C	581	585	Right-handed 310
Helix 76	AI4	D	11	16	Right-handed alpha
Helix 77	AI5	D	18	26	Right-handed alpha
Helix 78	AI6	D	41	62	Right-handed alpha
Helix 79	AI7	D	84	88	Right-handed 310
Helix 80	AI8	D	108	119	Right-handed alpha
Helix 81	AI9	D	124	134	Right-handed alpha
Helix 82	AJ1	D	137	146	Right-handed alpha
Helix 83	AJ2	D	147	156	Right-handed alpha
Helix 84	AJ3	D	162	166	Right-handed 310
Helix 85	AJ4	D	175	181	Right-handed alpha
Helix 86	AJ5	D	182	196	Right-handed alpha
Helix 87	AJ6	D	202	229	Right-handed alpha
Helix 88	AJ7	D	239	258	Right-handed alpha
Helix 89	AJ8	D	268	283	Right-handed alpha
Helix 90	AJ9	D	286	303	Right-handed alpha
Helix 91	AK1	D	309	315	Right-handed alpha
Helix 92	AK2	D	339	353	Right-handed alpha
Helix 93	AK3	D	369	383	Right-handed alpha
Helix 94	AK4	D	391	399	Right-handed alpha
Helix 95	AK5	D	426	436	Right-handed alpha
Helix 96	AK6	D	459	493	Right-handed alpha
Helix 97	AK7	D	495	500	Right-handed alpha
Helix 98	AK8	D	516	530	Right-handed alpha
Helix 99	AK9	D	558	577	Right-handed alpha
Helix 100	AL1	D	581	585	Right-handed 310

There are 24 sheets in PDB entry 38TD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	72	first strand
Strand 2	A	100	103	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	423	425	anti-parallel
Strand 3	A	507	515	parallel
Strand 4	A	416	419	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	423	425	anti-parallel
Strand 3	A	507	515	parallel
Strand 4	A	586	590	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	324	327	parallel
Strand 3	A	359	364	parallel
Strand 4	A	386	390	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	410	411	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	536	first strand
Strand 2	A	542	548	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	72	first strand
Strand 2	B	100	103	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	423	425	anti-parallel
Strand 3	B	507	515	parallel
Strand 4	B	416	419	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	423	425	anti-parallel
Strand 3	B	507	515	parallel
Strand 4	B	586	590	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	324	327	parallel
Strand 3	B	359	364	parallel
Strand 4	B	386	390	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	410	411	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	536	first strand
Strand 2	B	542	548	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	72	first strand
Strand 2	C	100	103	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	423	425	anti-parallel
Strand 3	C	507	515	parallel
Strand 4	C	416	419	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	423	425	anti-parallel
Strand 3	C	507	515	parallel
Strand 4	C	586	590	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	324	327	parallel
Strand 3	C	359	364	parallel
Strand 4	C	386	390	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	410	411	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	531	536	first strand
Strand 2	C	542	548	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	72	first strand
Strand 2	D	100	103	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	423	425	anti-parallel
Strand 3	D	507	515	parallel
Strand 4	D	416	419	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	423	425	anti-parallel
Strand 3	D	507	515	parallel
Strand 4	D	586	590	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	324	327	parallel
Strand 3	D	359	364	parallel
Strand 4	D	386	390	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	404	first strand
Strand 2	D	410	411	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	531	536	first strand
Strand 2	D	542	548	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 38TD

Analysis of interatomic Contacts of Structural Units in PDB entry:
38TD