Analysis of interatomic Contacts of Structural Units in PDB entry:
3A3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3A3J entry

There is 1 chain in PDB entry 3A3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 30GLU 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 3A3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 65Right-handed 310
Helix 2
2
A
66 81Right-handed alpha
Helix 3
3
A
97 101Right-handed 310
Helix 4
4
A
117 128Right-handed alpha
Helix 5
5
A
129 142Right-handed alpha
Helix 6
6
A
143 158Right-handed alpha
Helix 7
7
A
179 194Right-handed alpha
Helix 8
8
A
194 199Right-handed alpha
Helix 9
9
A
200 203Right-handed 310
Helix 10
10
A
217 222Right-handed 310
Helix 11
11
A
263 281Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3A3J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
40 45anti-parallel
Strand 3
A
253 261anti-parallel
Strand 4
A
239 247anti-parallel
Strand 5
A
226 235anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
114 116anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
211 214anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 288first strand
Strand 2
A
315 320anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 333first strand
Strand 2
A
347 355anti-parallel
Strand 3
A
358 367anti-parallel
Strand 4
A
306 310anti-parallel
Strand 5
A
293 300anti-parallel
Strand 6
A
338 339parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il