Analysis of interatomic Contacts of Structural Units in PDB entry:
3A44


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3A44 entry

There are 4 chains in PDB entry 3A44 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 2GLY 138
B
 HIS 2GLU 136
C
 HIS 2GLY 137
D
 GLU 3GLY 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3A44. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 20Right-handed alpha
Helix 2
2
A
40 53Right-handed alpha
Helix 3
3
A
82 94Right-handed alpha
Helix 4
4
A
98 108Right-handed alpha
Helix 5
5
B
4 20Right-handed alpha
Helix 6
6
B
40 53Right-handed alpha
Helix 7
7
B
82 91Right-handed alpha
Helix 8
8
B
103 108Right-handed alpha
Helix 9
9
C
2 20Right-handed alpha
Helix 10
10
C
40 53Right-handed alpha
Helix 11
11
C
83 89Right-handed alpha
Helix 12
12
D
4 20Right-handed alpha
Helix 13
13
D
40 53Right-handed alpha
Helix 14
14
D
82 86Right-handed alpha
Helix 15
15
D
87 93Right-handed alpha
Helix 16
16
D
104 108Right-handed 310
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There are 8 sheets in PDB entry 3A44. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 67first strand
Strand 2
A
25 34parallel
Strand 3
B
126 134anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
70 72anti-parallel
Strand 3
B
120 122anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
B
70 73anti-parallel
Strand 3
B
79 81anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 134first strand
Strand 2
B
25 34anti-parallel
Strand 3
B
61 67parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 67first strand
Strand 2
C
25 34parallel
Strand 3
D
126 134anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 81first strand
Strand 2
C
70 73anti-parallel
Strand 3
D
118 120anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 122first strand
Strand 2
D
70 72anti-parallel
Strand 3
D
79 81anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 134first strand
Strand 2
D
25 34anti-parallel
Strand 3
D
61 67parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il