Analysis of interatomic Contacts of Structural Units in PDB entry:
3A46


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3A46 entry

There are 8 chains in PDB entry 3A46 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLU 289
B
 PRO 2GLU 289
C
 G 1 G 13
D
 C 14 A 19
D
 G 21 C 26
E
 G 1 G 13
F
 C 14 A 19
F
 G 21 C 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3A46. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 19Right-handed alpha
Helix 2
2
A
31 36Right-handed alpha
Helix 3
3
A
40 47Right-handed alpha
Helix 4
4
A
124 133Right-handed alpha
Helix 5
5
A
146 153Right-handed 310
Helix 6
6
A
156 163Right-handed alpha
Helix 7
7
A
172 183Right-handed alpha
Helix 8
8
A
190 194Right-handed 310
Helix 9
9
A
195 216Right-handed alpha
Helix 10
10
A
222 224Right-handed 310
Helix 11
11
A
225 230Right-handed alpha
Helix 12
12
B
3 19Right-handed alpha
Helix 13
13
B
31 35Right-handed 310
Helix 14
14
B
40 47Right-handed alpha
Helix 15
15
B
124 133Right-handed alpha
Helix 16
16
B
146 153Right-handed 310
Helix 17
17
B
156 163Right-handed alpha
Helix 18
18
B
172 183Right-handed alpha
Helix 19
19
B
190 194Right-handed 310
Helix 20
20
B
195 216Right-handed alpha
Helix 21
21
B
222 224Right-handed 310
Helix 22
22
B
225 232Right-handed alpha
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There are 4 sheets in PDB entry 3A46. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
107 112anti-parallel
Strand 3
A
96 102anti-parallel
Strand 4
A
22 28anti-parallel
Strand 5
A
50 58anti-parallel
Strand 6
A
61 68anti-parallel
Strand 7
A
71 81anti-parallel
Strand 8
A
118 122anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
279 281anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 89first strand
Strand 2
B
107 112anti-parallel
Strand 3
B
96 102anti-parallel
Strand 4
B
22 28anti-parallel
Strand 5
B
50 58anti-parallel
Strand 6
B
61 68anti-parallel
Strand 7
B
71 81anti-parallel
Strand 8
B
118 122anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 267first strand
Strand 2
B
279 281anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il