Analysis of interatomic Contacts of Structural Units in PDB entry:
3A5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3A5V entry

There is 1 chain in PDB entry 3A5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3A5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
21 23Right-handed 310
Helix 3
3
A
24 38Right-handed alpha
Helix 4
4
A
39 44Right-handed alpha
Helix 5
5
A
75 86Right-handed alpha
Helix 6
6
A
110 122Right-handed alpha
Helix 7
7
A
139 157Right-handed alpha
Helix 8
8
A
172 177Right-handed alpha
Helix 9
9
A
216 228Right-handed alpha
Helix 10
10
A
229 231Right-handed 310
Helix 11
11
A
250 264Right-handed alpha
Helix 12
12
A
278 286Right-handed alpha
Helix 13
13
A
287 295Right-handed alpha
Helix 14
14
A
341 345Right-handed alpha
Helix 15
15
A
346 349Right-handed 310
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There are 3 sheets in PDB entry 3A5V. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
183 185parallel
Strand 3
A
162 165parallel
Strand 4
A
125 129parallel
Strand 5
A
89 95parallel
Strand 6
A
47 49parallel
Strand 7
A
11 14parallel
Strand 8
A
268 270parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 308first strand
Strand 2
A
311 318anti-parallel
Strand 3
A
322 329anti-parallel
Strand 4
A
384 390anti-parallel
Strand 5
A
358 362anti-parallel
Strand 6
A
367 372anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 340first strand
Strand 2
A
375 380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il